LOCUS BC008208 1493 bp mRNA linear HUM 30-SEP-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, mRNA (cDNA
clone IMAGE:3869206), partial cds.
ACCESSION BC008208
VERSION BC008208.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1493)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1493)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: i Column: 15.
FEATURES Location/Qualifiers
source 1..1493
/db_xref="H-InvDB:HIT000087014"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3869206"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1493
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/db_xref="GeneID:11325"
CDS <1..628
/gene="DDX42"
/gene_synonym="RHELP"
/gene_synonym="RNAHP"
/gene_synonym="SF3b125"
/codon_start=2
/product="DDX42 protein"
/protein_id="AAH08208.1"
/db_xref="GeneID:11325"
/translation="WTSAGSLNSVPTNSAQQGHNSPDSPVTSAAKGIPGFGNTGNISG
APVTYPSAGAQGVNNTASGNNSREGTGGSNGKRERYTENRGSSRHSHGETGNRHSDSP
RHGDGGRHGDGYRHPESSSRHTDGHRHGENRHGGSAGRHGENRGANDGRNGESRKEAF
NRESKMEPKMEPKVDSSKMDKVDSKTDKTADGFAVPEPPKRKKSRWDS"
BASE COUNT 429 a 291 c 408 g 365 t
ORIGIN
1 gtggactagt gcagggagct tgaattctgt tccaactaac tcagcacaac agggccataa
61 cagtcctgac agccccgtca ccagtgccgc caagggcatc ccaggctttg gcaatactgg
121 caacatcagt ggtgcccctg tgacctaccc gtctgccgga gcccaaggag tcaacaacac
181 agcttcaggg aataacagcc gagaagggac tgggggcagc aacgggaaaa gagagagata
241 tactgagaac cggggcagca gccgtcacag tcacggagag actggcaatc ggcatagcga
301 tagtccacgt cacggagatg gtggtcgcca tggagatgga taccgccatc cagaaagcag
361 cagccgtcat actgatggcc atcggcacgg ggagaacaga catggaggaa gcgcaggccg
421 gcatggggag aaccggggtg caaatgatgg tcggaatggg gaaagcagga aagaagcttt
481 taatcgtgag agcaagatgg agcccaagat ggaacccaaa gtggacagca gcaagatgga
541 caaggtggac agcaagacag ataagacagc tgacggcttt gctgtcccag agccgcctaa
601 acgcaagaaa agtcgatggg acagttagag gggatgtgct aaagcgtgaa atcagttgtc
661 cttaattttt agaaagattt tggtaactag gtgtctcagg gctgggttgg ggtccaaagt
721 gtaaggaccc cctgccctta gtggagagct ggagcttgga gacattaccc cttcatcaga
781 aggaattttc ggatgttttc ttgggaagct gttttggtcc ttggaagcag tgagagctgg
841 gaagcttctt ttggctctag gtgagttgtc atgcgggtaa gttgaggtta tcttgggata
901 aagggtcttc tagggcacaa aactcactct aggtttatat tgtatgtagc ttatattttt
961 tactaaggtg tcaccttata agcatctata aattgagttc tttttcttag ttgtatggcc
1021 aggcagtccc cattttagga gttggcttct gcaaattcaa tccattgagc taactgttgg
1081 ggagcaattt ggtagttgta gacatttgca gggaagggag atgtctgatt ctaaatggga
1141 gttgatgctc aggtccccag ccaggtttgc atccagccct gagacatgta ggaaacacct
1201 ttcagaccca ggctctgaag attcccagaa gccacaagga ttgaagggaa aaggtgatcc
1261 tggtaactgt tccaggattg ctccaggttt gagatggtat tgctaaattt aaaattaaac
1321 aagagaccca acaacagctt ttaaagtgtc ttctatttca ttgtattttt tttaacttgc
1381 cccaatgata gaaaagtctt ttgctgaaat gattttgatg atttttgttt atcgtttata
1441 aaaaggaaaa gaaatataca aactttgact tttgtgaaaa aaaaaaaaaa aaa
//