LOCUS BC008149 1482 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hydroxymethylbilane synthase, mRNA (cDNA clone
MGC:17205 IMAGE:4178944), complete cds.
ACCESSION BC008149
VERSION BC008149.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1482)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1482)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 66933007.
FEATURES Location/Qualifiers
source 1..1482
/db_xref="H-InvDB:HIT000033656"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17205 IMAGE:4178944"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1482
/gene="HMBS"
/gene_synonym="PBG-D"
/db_xref="GeneID:3145"
/db_xref="HGNC:HGNC:4982"
/db_xref="MIM:609806"
CDS 113..1198
/gene="HMBS"
/gene_synonym="PBG-D"
/codon_start=1
/product="hydroxymethylbilane synthase"
/protein_id="AAH08149.1"
/db_xref="GeneID:3145"
/db_xref="HGNC:HGNC:4982"
/db_xref="MIM:609806"
/translation="MSGNGNAAATAEENSPKMRVIRVGTRKSQLARIQTDSVVATLKA
SYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPT
VLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPH
LEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQG
ALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVHTAMKDGQL
YLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNL
GISLANLLLSKGAKNILDVARQLNDAH"
BASE COUNT 354 a 402 c 423 g 303 t
ORIGIN
1 ggacgacctc gggtcccacg tgtccccggt actcgccggc cggagcctcc ggcttcccgg
61 ggccggggga ccttagcggc acccacacac agcctacttt ccaagcggag ccatgtctgg
121 taacggcaat gcggctgcaa cggcggaaga aaacagccca aagatgagag tgattcgcgt
181 gggtacccgc aagagccagc ttgctcgcat acagacggac agtgtggtgg caacattgaa
241 agcctcgtac cctggcctgc agtttgaaat cattgctatg tccaccacag gggacaagat
301 tcttgatact gcactctcta agattggaga gaaaagcctg tttaccaagg agcttgaaca
361 tgccctggag aagaatgaag tggacctggt tgttcactcc ttgaaggacc tgcccactgt
421 gcttcctcct ggcttcacca tcggagccat ctgcaagcgg gaaaaccctc atgatgctgt
481 tgtctttcac ccaaaatttg ttgggaagac cctagaaacc ctgccagaga agagtgtggt
541 gggaaccagc tccctgcgaa gagcagccca gctgcagaga aagttcccgc atctggagtt
601 caggagtatt cggggaaacc tcaacacccg gcttcggaag ctggacgagc agcaggagtt
661 cagtgccatc atcctggcaa cagctggcct gcagcgcatg ggctggcaca accgggtggg
721 gcagatcctg caccctgagg aatgcatgta tgctgtgggc cagggggcct tgggcgtgga
781 agtgcgagcc aaggaccagg acatcttgga tctggtgggt gtgctgcacg atcccgagac
841 tctgcttcgc tgcatcgctg aaagggcctt cctgaggcac ctggaaggag gctgcagtgt
901 gccagtagcc gtgcatacag ctatgaagga tgggcaactg tacctgactg gaggagtctg
961 gagtctagac ggctcagata gcatacaaga gaccatgcag gctaccatcc atgtccctgc
1021 ccagcatgaa gatggccctg aggatgaccc acagttggta ggcatcactg ctcgtaacat
1081 tccacgaggg ccccagttgg ctgcccagaa cttgggcatc agcctggcca acttgttgct
1141 gagcaaagga gccaaaaaca tcctggatgt tgcacggcag cttaacgatg cccattaact
1201 ggtttgtggg gcacagatgc ctgggttgct gctgtccagt gcctacatcc cgggcctcag
1261 tgccccattc tcactgctat ctggggagtg attaccccgg gagactgaac tgcagggttc
1321 aagccttcca gggatttgcc tcaccttggg gccttgatga ctgccttgcc tcctcagtat
1381 gtgggggctt catctcttta gagaagtcca agcaacagcc tttgaatgta accaatccta
1441 ctaataaacc agttctgaag gtaaaaaaaa aaaaaaaaaa aa
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