LOCUS BC007915 1757 bp mRNA linear HUM 01-SEP-2006
DEFINITION Homo sapiens estrogen-related receptor alpha, mRNA (cDNA clone
IMAGE:4301880), partial cds.
ACCESSION BC007915
VERSION BC007915.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1757)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1757)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007915.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: n Column: 11.
FEATURES Location/Qualifiers
source 1..1757
/db_xref="H-InvDB:HIT000086953"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4301880"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1757
/gene="ESRRA"
/gene_synonym="ERR1"
/gene_synonym="ERRa"
/gene_synonym="ERRalpha"
/gene_synonym="NR3B1"
/db_xref="GeneID:2101"
/db_xref="HGNC:HGNC:3471"
/db_xref="MIM:601998"
CDS <1..963
/gene="ESRRA"
/gene_synonym="ERR1"
/gene_synonym="ERRa"
/gene_synonym="ERRalpha"
/gene_synonym="NR3B1"
/codon_start=1
/product="ESRRA protein"
/protein_id="AAH07915.2"
/db_xref="GeneID:2101"
/db_xref="HGNC:HGNC:3471"
/db_xref="MIM:601998"
/translation="KRTIQGSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKE
GVRLDRVRGGRQKYKRRPEVDPLPFPGPFPAGPLAVAGGPRKTAAPVNALVSHLLVVE
PEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQS
VWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGLGELGAALLQLVRRLQALRL
EREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAG
RLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD"
BASE COUNT 353 a 495 c 578 g 331 t
ORIGIN
1 aagaggacca tccaggggag catcgagtac agctgtccgg cctccaacga gtgtgagatc
61 accaagcgga gacgcaaggc ctgccaggcc tgccgcttca ccaagtgcct gcgggtgggc
121 atgctcaagg agggagtgcg cctggaccgc gtccggggtg ggcggcagaa gtacaagcgg
181 cggccggagg tggacccact gcccttcccg ggccccttcc ctgctgggcc cctggcagtc
241 gctggaggcc cccggaagac agcagcccca gtgaatgcac tggtgtctca tctgctggtg
301 gttgagcctg agaagctcta tgccatgcct gaccccgcag gccctgatgg gcacctccca
361 gccgtggcta ccctctgtga cctctttgac cgagagattg tggtcaccat cagctgggcc
421 aagagcatcc caggcttctc atcgctgtcg ctgtctgacc agatgtcagt actgcagagc
481 gtgtggatgg aggtgctggt gctgggtgtg gcccagcgct cactgccact gcaggatgag
541 ctggccttcg ctgaggactt agtcctggat gaagaggggg cacgggcagc tggcctgggg
601 gaactggggg ctgccctgct gcaactagtg cggcggctgc aggccctgcg gctggagcga
661 gaggagtatg ttctactaaa ggccttggcc cttgccaatt cagactctgt gcacatcgaa
721 gatgccgagg ctgtggagca gctgcgagaa gctctgcacg aggccctgct ggagtatgaa
781 gccggccggg ctggccccgg agggggtgct gagcggcggc gggcgggcag gctgctgctc
841 acgctaccgc tcctccgcca gacagcgggc aaagtgctgg cccatttcta tggggtgaag
901 ctggagggca aggtgcccat gcacaagctg ttcttggaga tgctcgaggc catgatggac
961 tgaggcaagg ggtgggactg gtgggggttc tggcaggacc tgcctagcat ggggtcagcc
1021 ccaagggctg gggcggagct ggggtctggg cagtgccaca gcctgctggc agggccaggg
1081 caatgccatc agcccctggg aacaggcccc acgccctctc ctccccctcc tagggggtgt
1141 cagaagctgg gaacgtgtgt ccaggctctg ggcacagtgc tgccccttgc aagccataac
1201 gtgcccccag agtgtagggg gccttgcgga agccataggg ggctgcacgg gatgcgtggg
1261 aggcagaaac ctatctcagg gagggaaggg gatggaggcc agagtctccc agtgggtgat
1321 gcttttgctg ctgcttaatc ctaccccctc ttcaaagcag agtgggactt ggagagcaaa
1381 ggcccatgcc cccttcgctc ctcctctcat catttgcatt gggcattagt gtcccccctt
1441 gaagcaataa ctccaagcag actccagccc ctggacccct ggggtggcca gggcttcccc
1501 atcagctccc aacgagcctc ctcagggggt aggagagcac tgcctctatg ccctgcagag
1561 caataacact atatttattt ttgggtttgg ccagggaggc gcagggacat ggggcaagcc
1621 agggcccaga gcccttggct gtacagagac tctattttaa tgtatatttg ctgcaaagag
1681 aaaccgcttt tggttttaaa cctttaatga gaaaaaaata tataataccg agctcaaaaa
1741 aaaaaaaaaa aaaaaaa
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