LOCUS BC007845 1770 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens lysosomal-associated membrane protein 1, mRNA (cDNA
clone IMAGE:4128923), partial cds.
ACCESSION BC007845
VERSION BC007845.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1770)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1770)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007845.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: g Column: 18.
FEATURES Location/Qualifiers
source 1..1770
/db_xref="H-InvDB:HIT000086933"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4128923"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1770
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/db_xref="GeneID:3916"
/db_xref="MIM:153330"
CDS <1..747
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/codon_start=1
/product="LAMP1 protein"
/protein_id="AAH07845.2"
/db_xref="GeneID:3916"
/db_xref="MIM:153330"
/translation="LHDATIQAYLSNSSFSRGETRCEQDRPSPTTAPPAPPSPSPSPV
PKSPSVDKYNVSGTNGTCLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGA
HLVTLELHSEGTTVLLFQFGMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQ
ATVGNSYKCNAEEHVRVTKAFSVNIFKVWVQAFKVEGGQFGSVEECLLDENSMLIPIA
VGGALAGLVLIVLIAYLVGRKRSHAGYQTI"
misc_feature 1..744
/gene="LAMP1"
/gene_synonym="CD107a"
/gene_synonym="LAMPA"
/gene_synonym="LGP120"
/note="Lamp; Region: Lysosome-associated membrane
glycoprotein (Lamp)"
/db_xref="CDD:pfam01299"
BASE COUNT 376 a 446 c 511 g 437 t
ORIGIN
1 ctccatgatg ccaccatcca ggcgtacctt tccaacagca gcttcagcag gggagagaca
61 cgctgtgaac aagacaggcc ttccccaacc acagcgcccc ctgcgccacc cagcccctcg
121 ccctcacccg tgcccaagag cccctctgtg gacaagtaca acgtgagcgg caccaacggg
181 acctgcctgc tggccagcat ggggctgcag ctgaacctca cctatgagag gaaggacaac
241 acgacggtga caaggcttct caacatcaac cccaacaaga cctcggccag cgggagctgc
301 ggcgcccacc tggtgactct ggagctgcac agcgagggca ccaccgtcct gctcttccag
361 ttcgggatga atgcaagttc tagccggttt ttcctacaag gaatccagtt gaatacaatt
421 cttcctgacg ccagagaccc tgcctttaaa gctgccaacg gctccctgcg agcgctgcag
481 gccacagtcg gcaattccta caagtgcaac gcggaggagc acgtccgtgt cacgaaggcg
541 ttttcagtca atatattcaa agtgtgggtc caggctttca aggtggaagg tggccagttt
601 ggctctgtgg aggagtgtct gctggacgag aacagcatgc tgatccccat cgctgtgggt
661 ggtgccctgg cggggctggt cctcatcgtc ctcatcgcct acctcgtcgg caggaagagg
721 agtcacgcag gctaccagac tatctagcct ggtgcacgca ggcacagcag ctgcaggggc
781 ctctgttcct ttctctgggc ttagggtcct gtcgaagggg aggcacactt tctggcaaac
841 gtttctcaaa tctgcttcat ccaatgtgaa gttcatcttg cagcatttac tatgcacaac
901 agagtaacta tcgaaatgac ggtgttaatt ttgctaactg ggttaaatat tttgctaact
961 ggttaaacat taatatttac caaagtagga ttttgagggt gggggtgctc tctctgaggg
1021 ggtgggggtg ccgctgtctc tgaggggtgg gggtgccgct gtctctgagg ggtgggggtg
1081 ccgctctctc tgagggggtg ggggtgccgc tttctctgag ggggtggggg tgccgctctc
1141 tctgaggggg tgggggtgct gctctctccg aggggtggaa tgccgctgtc tctgaggggt
1201 gggggtgccg ctctaaattg gctccatatc atttgagttt agggttctgg tgtttggttt
1261 cttcattctt tactgcactc agatttaagc cttacaaagg gaagcctctg gccgtcacac
1321 gtaggacgca tgaaggtcac tcgtggtgag gctgacatgc tcacacatta caacagtaga
1381 gagggaaaat cctaagacag aggaactcca gagatgagtg tctggagcgc ttcagttcag
1441 ctttaaaggc caggacgggc cacacgtggc tggcggcctc gttccagtgg cggcacgtcc
1501 ttgggcgtct ctaatgtctg cagctcaagg gctggcactt ttttaaatat aaaaatgggt
1561 gttattttta tttttttttg taaagtgatt tttggtcttc tgttgacatt cggggtgatc
1621 ctgttctgcg ctgtgtacaa tgtgagatcg gtgcgttctc ctgatgtttt gccgtggctt
1681 ggggattgta cacgggacca gctcacgtaa tgcattgcct gtaacaatgt aataaaaagc
1741 ctctttcttt ttaaaaaaaa aaaaaaaaaa
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