LOCUS BC007814 1534 bp mRNA linear HUM 04-JUN-2004
DEFINITION Homo sapiens major histocompatibility complex, class I, C, mRNA
(cDNA clone IMAGE:4299697), partial cds.
ACCESSION BC007814
VERSION BC007814.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1534)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1534)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007814.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 20 Row: m Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1534
/db_xref="H-InvDB:HIT000033464"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4299697"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1534
/gene="HLA-C"
/gene_synonym="D6S204"
/gene_synonym="HLA-JY3"
/db_xref="GeneID:3107"
/db_xref="MIM:142840"
CDS <1..1099
/gene="HLA-C"
/gene_synonym="D6S204"
/gene_synonym="HLA-JY3"
/codon_start=2
/product="HLA-C protein"
/protein_id="AAH07814.2"
/db_xref="GeneID:3107"
/db_xref="MIM:142840"
/translation="RVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPR
FISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLR
NLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAAD
TAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLS
DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQ
EQRYTCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGAVVTAMMCRR
KSSGGKGGSCSQAACSNSAQGSDESLITCKA"
BASE COUNT 332 a 452 c 460 g 290 t
ORIGIN
1 gcgggtcatg gcgccccgag ccctcctcct gctgctctcg ggaggcctgg ccctgaccga
61 gacctgggcc tgctcccact ccatgaggta tttcgacacc gccgtgtccc ggcccggccg
121 cggagagccc cgcttcatct cagtgggcta cgtggacgac acgcagttcg tgcggttcga
181 cagcgacgcc gcgagtccga gaggggagcc gcgggcgccg tgggtggagc aggaggggcc
241 ggagtattgg gaccgggaga cacagaagta caagcgccag gcacaggctg accgagtgag
301 cctgcggaac ctgcgcggct actacaacca gagcgaggac gggtctcaca ccctccagag
361 gatgtctggc tgcgacctgg ggcccgacgg gcgcctcctc cgcgggtatg accagtccgc
421 ctacgacggc aaggattaca tcgccctgaa cgaggacctg cgctcctgga ccgccgcgga
481 caccgcggct cagatcaccc agcgcaagtt ggaggcggcc cgtgcggcgg agcagctgag
541 agcctacctg gagggcacgt gcgtggagtg gctccgcaga tacctggaga acgggaagga
601 gacgctgcag cgcgcagaac ccccaaagac acacgtgacc caccaccccc tctctgacca
661 tgaggccacc ctgaggtgct gggccctggg cttctaccct gcggagatca cactgacctg
721 gcagcgggat ggggaggacc agacccagga caccgagctt gtggagacca ggccagcagg
781 agatggaacc ttccagaagt gggcagctgt ggtggtgcct tctggacaag agcagagata
841 cacgtgccat atgcagcacg aggggctgca agagcccctc accctgagct gggagccatc
901 ttcccagccc accatcccca tcatgggcat cgttgctggc ctggctgtcc tggttgtcct
961 agctgtcctt ggagctgtgg tcaccgctat gatgtgtagg aggaagagct caggtggaaa
1021 aggagggagc tgctctcagg ctgcgtgcag caacagtgcc cagggctctg atgagtctct
1081 catcacttgt aaagcctgag acagctgcct gtgtgggact gagatgcagg atttcttcac
1141 acctctcctt tgtgacttca agagcctctg gcatctcttt ctgcaaaggc acctgaatgt
1201 gtctgcgttc ctgttagcat aatgtgagga ggtggagaga cagcccaccc ccgtgtccac
1261 cgtgacccct gtccccacac tgacctgtgt tccctccccg atcatctttc ctgttccaga
1321 gaggtggggc tggatgtctc catctctgtc tcaaattcat ggtgcactga gctgcaactt
1381 cttacttccc taatgaagtt aagaacctga atataaattt gtgttctcaa atatttgcta
1441 tgaagcgttg atggattaat taaataagtc aattcctaga agttgagaga gcaaataaag
1501 acctgagaac cttccaaaaa aaaaaaaaaa aaaa
//