LOCUS BC007720 2855 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens 5-hydroxytryptamine (serotonin) receptor 1D, mRNA
(cDNA clone MGC:12645 IMAGE:4299633), complete cds.
ACCESSION BC007720
VERSION BC007720.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2855)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2855)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007720.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: m Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725667.
FEATURES Location/Qualifiers
source 1..2855
/db_xref="H-InvDB:HIT000033399"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12645 IMAGE:4299633"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2855
/gene="HTR1D"
/gene_synonym="5-HT1D"
/gene_synonym="HT1DA"
/gene_synonym="HTR1DA"
/gene_synonym="RDC4"
/db_xref="GeneID:3352"
/db_xref="HGNC:HGNC:5289"
/db_xref="MIM:182133"
CDS 511..1644
/gene="HTR1D"
/gene_synonym="5-HT1D"
/gene_synonym="HT1DA"
/gene_synonym="HTR1DA"
/gene_synonym="RDC4"
/codon_start=1
/product="5-hydroxytryptamine (serotonin) receptor 1D"
/protein_id="AAH07720.1"
/db_xref="GeneID:3352"
/db_xref="HGNC:HGNC:5289"
/db_xref="MIM:182133"
/translation="MSPLNQSAEGLPQEASNRSLNATETSEAWDPRTLQALKISLAVV
LSVITLATVLSNAFVLTTILLTRKLHTPANYLIGSLATTDLLVSILVMPISIAYTITH
TWNFGQILCDIWLSSDITCCTASILHLCVIALDRYWAITDALEYSKRRTAGHAATMIA
IVWAISICISIPPLFWRQAKAQEEMSDCLVNTSQISYTIYSTCGAFYIPSVLLIILYG
RIYRAARNRILNPPSLYGKRFTTAHLITGSAGSSLCSLNSSLHEGHSHSAGSPLFFNH
VKIKLADSALERKRISAARERKATKILGIILGAFIICWLPFFVVSLVLPICRDSCWIH
PALFDFFTWLGYLNSLINPIIYTVFNEEFRQAFQKIVPFRKAS"
BASE COUNT 665 a 747 c 634 g 809 t
ORIGIN
1 ctaaatccag aatcgtttca attactgtga ggggaattct gaagttctca ttaaacacac
61 gaatgtctca agctttgaaa agagccagat gccaaaggca agaatcccag ggcattgccc
121 acctgggtgt gatcccctga taattgtcta acaaattcag catgtgtccc ctgggcatga
181 ccatctgctg ggaaaagttc caggaccctg agacatcttg ggattcctgt ggtttaggaa
241 agacctttaa ctaccagctg gtagttgtct cagcattctt caaatagtcc ggtcttgttt
301 aatattatta ttattattgt tatttaattt tattttattg caactgtact tagagaatag
361 tctggtcttg agaccttttc actgtggtct gttctggtgt acggctccca ccagtgtgaa
421 gcagaaggat gactttgctc tgttgtcagg acaaccttga aggaaggagc caaatgtgtg
481 gaggtctgtg ggaagagaga gccacctagc atgtccccac tgaaccagtc agcagaaggc
541 cttccccagg aggcctccaa cagatccctg aatgccacag aaacctcaga ggcttgggat
601 cccaggaccc tccaggcgct caagatctcc cttgccgtgg tcctttccgt catcacactg
661 gccacagtcc tctccaatgc ctttgtactc accaccatct tactcaccag gaagctccac
721 acccctgcca actacctgat tggctccctg gccaccaccg acctcttggt ttccatcttg
781 gtaatgccca tcagcatcgc ctataccatc acccacacct ggaactttgg ccaaatcttg
841 tgtgacatct ggctgtcctc tgacatcacg tgctgcacag cctccatcct gcatctctgt
901 gtcattgctc tggacaggta ctgggcaatc acagatgccc tggaatacag taaacgcagg
961 acggctggcc acgcggccac catgatcgcc attgtctggg ccatctccat ctgcatctcc
1021 atccccccgc tcttctggcg gcaggccaag gcccaggagg agatgtcgga ctgtctggtg
1081 aacacctctc agatttccta caccatctac tccacctgtg gggccttcta cattccctcg
1141 gtgttgctca tcatcctata tggccggatc taccgggctg cccggaaccg catcctgaat
1201 ccaccctcac tctatgggaa gcgcttcacc acggcccacc tcatcacagg ctctgccggg
1261 tcctcgctct gctcgctcaa ctccagcctc catgaggggc actcgcactc ggctggctcc
1321 cctctctttt tcaaccacgt gaaaatcaag cttgctgaca gtgccctgga acgcaagagg
1381 atttctgctg ctcgagaaag gaaagccact aaaatcctgg gcatcattct gggggccttt
1441 atcatctgct ggctgccctt cttcgtggtg tctctggtcc tccccatctg ccgggactcc
1501 tgctggatcc acccggcgct ctttgacttc ttcacctggc taggctattt aaactccctc
1561 atcaatccaa taatctacac tgtgtttaat gaagagtttc ggcaagcttt tcagaaaatt
1621 gtccctttcc ggaaggcctc ctagtcttat tcggtgatga ctcttgttat cttttgtgtc
1681 ctgtaacctc atcgggattg tctttttttt ttaattattt tctgagactt ggattaattc
1741 atggtatctt gagtcttggt tcaatcaaca gaattgttct ttttcctgtt gttttcttaa
1801 cttctgaaag agctgtgggt ggtggggggc ggggggcagg actgaagatt tcactactta
1861 gcataatatt ttctttcttt tttttttttt ttgagacgga gtcttgccct ctcgccaggc
1921 tggagtgtag tggcacaatc tcagctcact gcaacctccg catcccgggt tcaagagatt
1981 ctgcctcagc ctccagagta gctgggacta caaacgtgtg tcaccaggcc cagctaattt
2041 ttgtattttt aataaagacg gggtttcatc atgttggcca gggtggtctc gatctcttga
2101 cctcgtgatc cgcccgcctc agcatcccaa agtgctggga ttacaggcat gagccactgt
2161 gcctggccaa cataatgttt tcacagttcc tctttgttgg aagaagtgtg tgacctacaa
2221 gattcctggt tgatacagtt caggtgagaa actgtttgat tatagaaaag accccagact
2281 cagagggaag gctctctggt ctacctgaga tctatatgga gcttaaagga gggtgaataa
2341 gattaatgac ctgaattgaa agagaatttg gagccaggat gggtctccat tctgtgtggc
2401 accttgattg gaaaataata tccatgcgtt tcttccactg agtctttctt agattaaatc
2461 tctcccagtt gtccgtgaag agaaagacag tatttgcagt gccgatgata tagagtgact
2521 tggagagaga ttcagaagtt aggggtagcg ggggtaggat ggttgggacc agattgacta
2581 ccctgtaccc ttccttcttc cccaatatgc ctgcgccatc ttcacattct gaagttgaaa
2641 cccatgatca cccctttgag gtagattgac cggctttaga cgcccacccc ccacccaccg
2701 caagctttga gtgggacacc attctgaatt ttttttctga attttttttt aacatctctt
2761 tctcattaga gatctgaaaa ctcattagag atgttgagtc ttatcaaata aaaagcatga
2821 gacatcatgg ccaaaaaaaa aaaaaaaaaa aaaaa
//