LOCUS BC007696 2882 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens collagen, type XXVII, alpha 1, mRNA (cDNA clone
IMAGE:3953131), partial cds.
ACCESSION BC007696
VERSION BC007696.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2882)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2882)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (11-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC007696.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: m Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14249645.
FEATURES Location/Qualifiers
source 1..2882
/db_xref="H-InvDB:HIT000033387"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3953131"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 640 a 987 c 721 g 534 t
ORIGIN
1 ctcagctgga cgaaggccgg gagccctgca cccccgggag tcattccttt ccagtcgggc
61 ttcatcttta cgcagcgggc ccggctccag gctcccacgg gcaccatcat tcctgccgcc
121 ttgggcacag agctggcact ggtgctgagc ctctgctccc accgggtgaa ccatgccttc
181 ctcttcgctg tccgcagccg gaaacgcaag ctgcagctgg gcctgcagtt cctccccggc
241 aagacggtcg tccacctcgg gtcccggcgc tcagtggcct tcgacctcga catgcacgac
301 gggcgctggc accacctggc cctcgagctc cgaggccgca cagtcactct ggtgactgcc
361 tgcgggcagc gccgggtgcc tgtcctgctg cctttccaca gggaccctgc actcgaccct
421 gggggctcct tcctctttgg gaagatgaac ccgcatgcag tccagtttga aggtgctctc
481 tgccagttca gtatctaccc tgtgacgcag gtcgctcaca attactgtac ccacctgagg
541 aagcagtgtg gacaggctga cacgtaccag tccccactgg gacctctctt ctcccaagac
601 tctggcagac cttttacctt ccagtccgac ctcgccctgc taggcctgga gaacttgacc
661 actgccacac cagccctggg gtcactgcca gcaggcaggg gacccagggg gactgtggca
721 cccgccacgc ccaccaagcc ccaaaggact agccccacaa accctcacca gcatatggcg
781 gtgggaggcc cagcccaaac cccgctgcta cctgccaagc tgtcagccag taacgcactt
841 gatcccatgc tcccagcctc tgttggcggc tctaccagaa cgcctcgccc tgcggccgct
901 caaccatcac agaagatcac agccaccaaa atccccaaaa gcctccctac caagccttcg
961 gccccttcta cttcaattgt gcccatcaaa agcccccatc ctacccagaa aacagctcca
1021 tcttcattta caaagtcagc cctacccact cagaagcaag tgccacctac ttcccgtcca
1081 gttcctgcca gagtctcccg tcccacagag aagcccatcc agaggaaccc gggaatgccc
1141 aggcccccac cgcccagcac ccggccccta cctcctacca ccagctcctc taaaaaaccc
1201 attcccacac tagctcggac tgaggccaag ataaccagcc atgccagtaa gccggcctct
1261 gcccgcacca gcacccacaa acctccccca tttactgctt tatcctcatc tcctgcccct
1321 actcctggtt ctaccaggag tactcggcca ccagccacga tggtacctcc aacttcgggc
1381 accagcactc ccagaacagc acctgccgtc cccactcctg gctcagctcc cactggaagc
1441 aagaagccca ctggatcgga agcctcaaag aaagccggac ccaagagcag cccccggaag
1501 cctgtccccc tcagacctgg gaaggcagcc agggatgtcc ccttgagcga tctgacaacc
1561 aggcctagcc ccagacagcc ccagcccagt cagcagacca ccccggccct ggtattggcc
1621 ccggcgcaat tcctgtcctc cagcccccgg cccacgagca gtggctattc gttcttccac
1681 ctggcaggat ctacgccttt ccctctgctg atggggcctc cgggacccaa gggagactgt
1741 ggtttgccgg gtccccctgg gctacctggg ctacctggaa tccctggtgc acgtgggcct
1801 cggggtcctc ctgggcctta tggaaatcca ggtctccccg gccctcctgg agccaaaggt
1861 gacatgggct tgcctgggct ctccgggaat ccaggacctc cgggacgaaa ggggttacct
1921 ggaccggtag gagatcccgc ccccaaaggc agcaggggct acattgggct cccagggctc
1981 ttcggcctgc cagggtctga tggagaacga ggcctgcctg gcgttcctgg caagaggggc
2041 aagatgggta tgccggtcct tctaccccaa agttcagagg ccagaggtgg gaactcaatg
2101 ccttcagaag gtgccctggc tggacgccat ggctcacacc tgtaatccca acactttggg
2161 aggccaaggc aggcagatcg cttgagccca ggagttcgag accagcttgg gcaacatgga
2221 gaaaccccat ctttaccaaa aatacaaaaa ttagccaggt gtagtggtgt gcatctgtaa
2281 tcccagctac ttgggaggct gaggcggcag gatcactagg aggcagaggt tgcagtgagc
2341 agttatcaca ccactgcact tcagcctgga tgacagagtg agaccctgta tcatgaaaaa
2401 aaaagaagga tcccctggac acagcccacc tggctgattc ttgtcccagg aggtgagacg
2461 atctaccttc agcatgacca agaagagctg gtttaggtga gactggaatt taccagggga
2521 gaccctaaag atgtggggga ggaagcttgg gtaaggtcag atatgccccc acaaagacat
2581 gatctggaaa cacacacaca ccctcccctg ccacactcct ctgccaccct ctgcaaccag
2641 ttggacacgc gtttgagcag cttctacata ccaggctttg cccgtgcata gctcatatga
2701 acatgccaaa ctccagaggt ggacctgggc tctgcttgct ttatgacctt ggccatgtga
2761 tgttgcctaa ccgagtctca attttcccat ctgtgaaatg ggactgataa cttttccctc
2821 aaagatagat atcaaatgca aaatgaagtc ttgcatgcaa agtgaaaaaa aaaaaaaaaa
2881 aa
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