LOCUS BC007580 2625 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens jub, ajuba homolog (Xenopus laevis), mRNA (cDNA clone
MGC:15563 IMAGE:3139903), complete cds.
ACCESSION BC007580
VERSION BC007580.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2625)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2625)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: h Column: 16.
FEATURES Location/Qualifiers
source 1..2625
/db_xref="H-InvDB:HIT000033312"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15563 IMAGE:3139903"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2625
/gene="JUB"
/gene_synonym="MGC15563"
/db_xref="GeneID:84962"
CDS 73..1689
/gene="JUB"
/gene_synonym="MGC15563"
/codon_start=1
/product="JUB protein"
/protein_id="AAH07580.1"
/db_xref="GeneID:84962"
/translation="MERLGEKASRLLEKFGRRKGESSRSGSDGTPGPGKGRLSGLGGP
RKSGPRGATGGPGDEPLEPAREQGSLDAERNQRGSFEAPRYEGSFPAGPPPTRALPLP
QSLPPDFRLEPTAPALSPRSSFASSSASDASKPSSPRGSLLLDGAGAGGAGGSRPCSN
RTSGISMGYDQRHGSPLPAGPCLFGPPLAGAPAGYSPGGVPSAYPELHAALDRLYAQR
PAGFGCQESRHSYPPALGSPGALAGAGVGAAGPLERRGAQPGRHSVTGYGDCAVGARY
QDELTALLRLTVGTGGREAGARGEPSGIEPSGLEEPPGPFVPEAARARMREPEAREDY
FGTCIKCNKGIYGQSNACQALDSLYHTQCFVCCSCGRTLRCKAFYSVNGSVYCEEDYL
FSGFQEAAEKCCVCGHLILEKILQAMGKSYHPGCFRCIVCNKCLDGIPFTVDFSNQVY
CVTDYHKNYAPKCAACGQPILPSEGCEDIVRVISMDRDYHFECYHCEDCRMQLSDEEG
CCCFPLDGHLLCHGCHMQRLNARQPPANYI"
misc_feature 1084..1242
/gene="JUB"
/gene_synonym="MGC15563"
/note="LIM; Region: Zinc-binding domain present in Lin-11,
Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains
bind protein partners via tyrosine-containing motifs. LIM
domains are found in many key regulators of developmental
pathways"
/db_xref="CDD:smart00132"
misc_feature 1276..1434
/gene="JUB"
/gene_synonym="MGC15563"
/note="LIM; Region: Zinc-binding domain present in Lin-11,
Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains
bind protein partners via tyrosine-containing motifs. LIM
domains are found in many key regulators of developmental
pathways"
/db_xref="CDD:smart00132"
misc_feature 1456..1641
/gene="JUB"
/gene_synonym="MGC15563"
/note="LIM; Region: Zinc-binding domain present in Lin-11,
Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains
bind protein partners via tyrosine-containing motifs. LIM
domains are found in many key regulators of developmental
pathways"
/db_xref="CDD:smart00132"
BASE COUNT 576 a 704 c 760 g 585 t
ORIGIN
1 aaagagaacc ggccgccgag acgccgcagg gtgccaggcg gggagggggc gagaggcccc
61 aggcccgagg gcatggagcg gttaggagag aaagccagtc gcctgctgga gaagttcggc
121 cgcagaaagg gtgaatctag ccggtctggg tctgacggga cccccgggcc gggcaagggg
181 cgcctaagtg ggttgggggg acctaggaag tcagggcccc gaggagctac tgggggacct
241 ggggatgagc cgttggagcc ggcccgggag caaggttccc tggacgctga gcgaaatcag
301 cgcggctcct ttgaggcgcc gcgctacgaa ggctcttttc ccgcggggcc gccgcccacc
361 cgggccttgc ctctacctca gtcgttgccc cccgattttc ggctggagcc cacggccccg
421 gccctcagcc cccgctctag cttcgccagt agctcggcca gcgacgcgag caagccgtcc
481 agcccccggg gcagcctgct gctggacggg gcgggggctg gcggagctgg aggtagccgg
541 ccctgcagca atcgcaccag cggcatcagc atgggctacg accagcgcca cgggagcccc
601 ttgccagcgg ggccgtgcct gtttggccca cccctggccg gagcaccggc aggctattct
661 cccggagggg tcccgtccgc ctacccggag ctccacgccg ccctggaccg attgtacgct
721 cagcggcccg cggggttcgg ctgccaggaa agccgccact cgtatccccc ggccctgggc
781 agccctggag ctctagccgg ggccggagtg ggagcggcgg ggcccttgga gagacggggg
841 gcgcaacccg gacgacactc tgtgaccggc tacggggact gcgccgtggg cgcccggtac
901 caggacgagc taacagcttt gcttcgcctg acggtgggca ccggtgggcg agaagccgga
961 gcccgcggag aaccctcggg gattgagccg tcgggtctgg aggagccacc aggtcctttc
1021 gttccggagg ccgcccgggc ccggatgcgg gagccagagg ccagggagga ctacttcggc
1081 acctgtatca agtgcaacaa aggcatctat gggcagagca atgcctgcca ggccctggac
1141 agcctctacc acacccagtg ctttgtttgc tgctcttgtg ggcgaacttt gcgttgcaag
1201 gctttctaca gtgtcaatgg ctctgtgtac tgtgaggaag attatctgtt ttcagggttt
1261 caggaggcag ctgagaaatg ctgtgtctgt ggtcacttga ttttggagaa gatcctacaa
1321 gcaatgggga agtcctatca tccaggctgt ttccgatgca ttgtttgcaa caagtgcctg
1381 gatggcatcc ccttcacagt ggacttctcc aaccaagtat actgtgtcac cgactaccac
1441 aaaaattatg ctcctaagtg tgcagcctgt ggccaaccca tcctcccctc tgagggctgt
1501 gaggacatcg tgagggtgat atccatggac cgggattatc actttgagtg ctaccactgt
1561 gaggactgcc ggatgcagct gagtgatgag gaaggctgct gctgtttccc tctggatggg
1621 cacttgctct gccatggttg ccacatgcag cggctcaatg cccgacaacc ccctgccaac
1681 tatatctgag ctgcaatcac tgctgctgct gtcaccctgc agacaaactg ctgtggccag
1741 tgggcccctc tgaggccagc caaggcaaag aatgcactct gcaggcctgg cagaagagtc
1801 ctctggggag gaccccaagg gccggagacc caaagatcat gatattccaa atggattgtg
1861 gaagagaaac cttatattta ccagggtggg ggcgactggc ctttttccca tgtgtgcagt
1921 ctgagcttag gcacacacag gagggttcca ggactttctg aacatctgat tctgtatctt
1981 cagtatatat attttgtttg ttttagagat gggatctcac catgttgccc aggctagtct
2041 tgaactcctg ggctcgaatg atcctcccac cttggcctcc caaggtgctg ggattatagg
2101 cgtaagccac tgtgtctggc ctagtgtatg attatgcatg agtcacgcaa tgttctggtc
2161 ctggattcca ggagtagagg acctagcttt aaatcaatta gtttcagttt gcttgaaact
2221 agttcaccta aagctagatc tcttaaaacc aatttactga aaacttgttt gcttaaagtt
2281 aatgacttaa tgactaattt gccaaaagct caattcctat tttggtgtgt ttatatccat
2341 ttaggtgtcc tattcttttt tgtcatgctt tggatatttc aaggatttat atctattcat
2401 ccaagagtac ttctgagcta ttatcagcaa cataaattta tcaaatttgc agcactttgt
2461 aaatgatgag attgcttcct acctttatgg atgtcttttt ctatgttatc taccattcaa
2521 aaactttttt aaaaagttta aagtttctag caataaatac aattggtaca gaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaacc tcggg
//