LOCUS BC007553 2614 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens calpain 10, mRNA (cDNA clone MGC:15475 IMAGE:2967328),
complete cds.
ACCESSION BC007553
VERSION BC007553.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2614)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2614)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: d Column: 20.
FEATURES Location/Qualifiers
source 1..2614
/db_xref="H-InvDB:HIT000086843"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15475 IMAGE:2967328"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2614
/gene="CAPN10"
/db_xref="GeneID:11132"
/db_xref="HGNC:HGNC:1477"
/db_xref="MIM:605286"
CDS 146..2164
/gene="CAPN10"
/codon_start=1
/product="calpain 10"
/protein_id="AAH07553.2"
/db_xref="GeneID:11132"
/db_xref="HGNC:HGNC:1477"
/db_xref="MIM:605286"
/translation="MRAGRGATPARELFRDAAFPAADSSLFCDLSTPLAQFREDITWR
RPQEICATPRLFPDDPREGQVKQGLLGDCWFLCACAALQKSRHLLDQVIPPGQPSWAD
QEYRGSFTCRIWQFGRWVEVTTDDRLPCLAGRLCFSRCQREDVFWLPLLEKVYAKVHG
SYEHLWAGQVADALVDLTGGLAERWNLKGVAGSGGQQDRPGRWEHRTCRQLLHLKDQC
LISCCVLSPRAGARELGEFHAFIVSDLRELQGQAGQCILLLRIQNPWGRRCWQGLWRE
GGEGWSQVDAAVASELLSQLQEGEFWVEEEEFLREFDELTVGYPVTEAGHLQSLYTER
LLCHTRALPGAWVKGQSAGGCRNNSGFPSNPKFWLRVSEPSEVYIAVLQRSRLHAADW
AGRARALVGDSHTSWSPASIPGKHYQAVGLHLWKVEKRRVNLPRVLSMPPVAGTACHA
YDREVHLRCELSPGYYLAVPSTFLKDAPGEFLLRVFSTGRVSLSAIRAVAKNTTPGAA
LPAGEWGTVQLRGSWRVGQTAGGSRNFASYPTNPCFPFSVPEGPGPRCVRITLHQHCR
PSDTEFHPIGFHIFQVPEGGRSQDAPPLLLQEPLLSCVPHRYAQEVSRLCLLPAGTYK
VVPSTYLPDTEGAFTVTIATRIDRPSIHSQEMLGQFLQEVSVMAVMKT"
BASE COUNT 470 a 809 c 886 g 449 t
ORIGIN
1 cacctgcggg gccctcgggc ttggagggct gggccgggcg gggaacgggc ggggcgggcc
61 ggaggcggcg gcggctgact cgccttctct ccggggctgc gaccccgagg caaccggctg
121 cagatgggag cccgcggagc cgaggatgcg ggcgggccgg ggcgcgacgc cggcgaggga
181 gctgttccgg gacgccgcct tccccgccgc ggactcctcg ctcttctgcg acttgtctac
241 gccgctggcc cagttccgcg aggacatcac gtggaggcgg ccccaggaga tttgtgccac
301 accccggctg tttccagatg acccacggga agggcaggtg aagcaggggc tgctggggga
361 ttgctggttc ctgtgtgcct gcgccgcgct gcagaagagc aggcacctcc tggaccaggt
421 cattcctccg ggacagccga gctgggccga ccaggagtac cggggctcct tcacctgtcg
481 catttggcag tttggacgct gggtggaggt gaccacagat gaccgcctgc cgtgccttgc
541 agggagactc tgtttctccc gctgccagag ggaggatgtg ttctggctcc ccttactgga
601 aaaggtctac gccaaggtcc atgggtccta cgagcacctg tgggccgggc aggtggcgga
661 tgccctggtg gacctgaccg gcggcctggc agaaagatgg aacctgaagg gcgtagcagg
721 aagcggaggc cagcaggaca ggccaggccg ctgggagcac aggacttgtc ggcagctgct
781 ccacctgaag gaccagtgtc tgatcagctg ctgcgtgctc agccccagag caggtgcccg
841 ggagctgggg gagttccatg ccttcattgt ctcggacctg cgggagctcc agggtcaggc
901 gggccagtgc atcctgctgc tgcggatcca gaacccctgg ggccggcggt gctggcaggg
961 gctctggaga gaggggggtg aagggtggag ccaggtagat gcagcggtag catctgagct
1021 cctgtcccag ctccaggaag gggagttctg ggtggaggag gaggagttcc tcagggagtt
1081 tgacgagctc accgttggct acccggtcac ggaggccggc cacctgcaga gcctctacac
1141 agagaggctg ctctgccata cgcgggcgct gcctggggcc tgggtcaagg gccagtcagc
1201 aggaggctgc cggaacaaca gcggctttcc cagcaacccc aaattctggc tgcgggtctc
1261 agaaccgagt gaggtgtaca ttgccgtcct gcagagatcc aggctgcacg cggcggactg
1321 ggcaggccgg gcccgggcac tggtgggtga cagtcatact tcgtggagcc cagcgagcat
1381 cccgggcaag cactaccagg ctgtgggtct gcacctctgg aaggtagaga agcggcgggt
1441 caatctgcct agggtcctgt ccatgccccc cgtggctggc accgcgtgcc atgcatacga
1501 ccgggaggtc cacctgcgtt gtgagctctc accgggctac tacctggctg tccccagcac
1561 cttcctgaag gacgcgccag gggagttcct gctccgagtc ttctctaccg ggcgagtctc
1621 ccttagcgcc atcagggcag tggccaagaa caccaccccc ggggcagccc tgcctgcggg
1681 ggagtggggg accgtgcagc tacggggttc ttggagagtc ggccagacgg cggggggcag
1741 caggaacttt gcctcatacc ccaccaaccc ctgcttcccc ttctcggtcc ccgagggccc
1801 tggcccccgc tgcgtccgca tcactctgca tcagcactgc cggcccagtg acaccgagtt
1861 ccaccccatc ggcttccata tcttccaggt cccagagggt ggaaggagcc aggacgcacc
1921 cccactgctg ctgcaggagc cgctgctgag ctgcgtgcca catcgctacg cccaggaggt
1981 gagccggctc tgcctcctgc ctgcaggcac ctacaaggtt gtgccctcca cctacctgcc
2041 ggacacagag ggggccttca cagtgaccat cgcaaccagg attgacaggc catccattca
2101 cagccaggag atgctgggcc agttcctcca agaggtctcc gtcatggcag tgatgaaaac
2161 ctaacagggt ggccccctgt gccagctcag gtgactggag cccgagggcc tgacaggttc
2221 ccagcagctg ggccggccag ccttgcactg tgggggctgg tcctgagtct tggcctgcct
2281 cccagccctg ccagggggct gcggcctagg ggtccacggg aagcctccgt caggagagac
2341 gcagccctgg gggccagctg gtgctgcaag gaagggtggg aagcttgctg gcttctgttg
2401 cgccactgag acggcagaga ccccaggatc ccagagcttc ccaggatccc tcccagatcc
2461 tctgctgact ccatatggag gcctcacacc cagagggtag ggcagcagat cttctttata
2521 actatttatt gttcgaatca cttttaggat gtaactttat aaataaacat gagcgctgat
2581 gatttgcaaa aaaaaaaaaa aaaaaaaaaa aaaa
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