LOCUS BC007508 1952 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ataxin 10, mRNA (cDNA clone MGC:4152 IMAGE:3030062),
complete cds.
ACCESSION BC007508
VERSION BC007508.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1952)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1952)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC007508.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: n Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 51093837.
FEATURES Location/Qualifiers
source 1..1952
/db_xref="H-InvDB:HIT000033262"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4152 IMAGE:3030062"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1952
/gene="ATXN10"
/gene_synonym="E46L"
/gene_synonym="FLJ37990"
/db_xref="GeneID:25814"
/db_xref="HGNC:HGNC:10549"
/db_xref="MIM:603516"
CDS 189..1616
/gene="ATXN10"
/gene_synonym="E46L"
/gene_synonym="FLJ37990"
/codon_start=1
/product="ataxin 10"
/protein_id="AAH07508.1"
/db_xref="GeneID:25814"
/db_xref="HGNC:HGNC:10549"
/db_xref="MIM:603516"
/translation="MAAPRPPPARLSGVMVPAPIQDLEALRALTALFKEQRNRETAPR
TIFQRVLDILKKSSHAVELACRDPSQVENLASSLQLITECFRCLRNACIECSVNQNSI
RNLDTIGVAVDLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEDSQSIVWVHAFPE
LFLSCLNHPDKKIVAYSSMILFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFL
IITDLFLKSPELVQAMFPKLNNQERVTLLDLMIAKITSDEPLTKDDIPVFLRHAELIA
STFVDQCKTVLKLASEEPPDDEEALATIRLLDVLCEMTVNTELLGYLQVFPGLLERVI
DLLRVIHVAGKETTNIFSNCGCVRAEGDISNVANGFKSHLIRLIGNLCYKNKDNQDKV
NELDGIPLILDNCNISDSNPFLTQWVIYAIRNLTEDNSQNQDLIAKMEEQGLADASLL
KKVGFEVEKKGEKLILKSTRDTPKP"
BASE COUNT 526 a 445 c 457 g 524 t
ORIGIN
1 agagctctcc ggcggcggcg cagcttcagg gcagcgcggg ctgcagcggc ggcggcggtt
61 agggctgtgt agggcgaggc ctcccccttc ctcctcgcca tcctactcct ccctcctcgt
121 catcctcccc cttcgtcctc ctcgccttcc tcctcctcgt caggctcgac ccagctgtga
181 gcggcaagat ggcggcgccc aggccgccgc ctgccaggct gtcgggcgtc atggtgccgg
241 cgcccatcca agacctggag gccctgcgcg cgctcacggc gctcttcaaa gagcagcgga
301 accgagaaac agcacccagg actatcttcc aaagagttct ggatatccta aagaaatctt
361 ctcatgctgt tgagcttgcc tgcagagatc catcccaagt ggaaaacctg gcttccagtc
421 tgcagttaat aacagaatgc ttcaggtgtc ttcgcaatgc ttgcatagag tgttctgtga
481 accagaattc aatcaggaac ttggatacga ttggtgttgc tgttgatttg attcttctgt
541 ttcgtgaact gcgagtggaa caggaatctc tgttgacagc ttttcgctgt ggcctgcagt
601 ttttaggcaa cattgcctca cggaatgaag attcccagtc tattgtttgg gtgcatgctt
661 tcccagaact gtttttgtct tgcttaaatc atccggacaa aaaaattgtt gcctactctt
721 caatgatttt gtttacatcc cttaatcatg aaagaatgaa agaactggag gagaacctca
781 atattgcaat tgatgtcata gatgcttacc aaaaacatcc tgaatcagaa tggccgttct
841 tgattattac agacctcttt ctgaaaagcc cggaattggt acaagccatg tttcccaaac
901 tgaacaatca agaaagagtt acactgttag accttatgat agccaagata acgagtgatg
961 agccactcac caaggatgac atccctgtgt ttttgcggca tgctgagttg attgcaagca
1021 cctttgtgga tcagtgcaag actgtgctca agctggcctc tgaggagcct cctgatgatg
1081 aggaggcact ggctacaatt aggcttctcg acgtcctgtg cgaaatgact gtgaatactg
1141 agctgctcgg ctatctgcag gttttccctg gcttgctgga aagagtgatt gatcttttgc
1201 gggtgattca tgtagctgga aaagaaacca caaacatctt cagtaattgt ggttgcgtga
1261 gagcagaagg tgacatctcc aatgtggcca atgggtttaa gtctcatctc attcgtctga
1321 ttggaaatct gtgttacaag aataaagata accaagacaa ggtaaatgag ctggatggta
1381 tcccgttgat cctggacaac tgcaacatca gtgacagtaa cccctttctg acccagtggg
1441 tgatatatgc catccgaaac cttaccgaag acaacagcca aaaccaagat ttgattgcaa
1501 agatggagga acaggggctg gcagatgcat ccctacttaa aaaagtgggt tttgaagttg
1561 aaaagaaagg cgaaaagctg atcctgaaat ctactagaga cacccctaag ccatgaatga
1621 actacatcca aatacctgaa tttttggaat ctgtttcatg gatttttcat cttctaccgt
1681 atgtgaaatt gcaagtgttt gaagatttat aagtacaaat ttgggaacat acaaatcttt
1741 taggtagtag agtttaacgt gtataagcta aaagtgaaag taactgagtg ttctcttgtt
1801 tctttgcatt aatgtaactg tgtggtttgc ctttgtcccc ctggatagaa cgtgcattta
1861 aagaatatat tgtacttact gtgacagcag ataataaacc agtctcttgg agggcacaac
1921 ccttatttga caaaaaaaaa aaaaaaaaaa aa
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