LOCUS BC007293 1646 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens 4-hydroxyphenylpyruvate dioxygenase-like, mRNA (cDNA
clone MGC:15668 IMAGE:3349473), complete cds.
ACCESSION BC007293
VERSION BC007293.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1646)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1646)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 22 Row: m Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50345871.
FEATURES Location/Qualifiers
source 1..1646
/db_xref="H-InvDB:HIT000033124"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15668 IMAGE:3349473"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1646
/gene="HPDL"
/gene_synonym="4-HPPD-L"
/gene_synonym="RP4-534D1.1"
/db_xref="GeneID:84842"
/db_xref="HGNC:HGNC:28242"
CDS 245..1360
/gene="HPDL"
/gene_synonym="4-HPPD-L"
/gene_synonym="RP4-534D1.1"
/codon_start=1
/product="4-hydroxyphenylpyruvate dioxygenase-like"
/protein_id="AAH07293.1"
/db_xref="GeneID:84842"
/db_xref="HGNC:HGNC:28242"
/translation="MAAPALRLCHIAFHVPAGQPLARNLQRLFGFQPLASREVDGWRQ
LALRSGDAVFLVNEGAGSGEPLYGLDPRHAVPSATNLCFDVADAGAATRELAALGCSV
PVPPVRVRDAQGAATYAVVSSPAGILSLTLLERAGYRGPFLPGFRPVSSAPGPGWVSR
VDHLTLACTPGSSPTLLRWFHDCLGFCHLPLSPGEDPELGLEMTAGFGLGGLRLTALQ
AQPGSIVPTLVLAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATA
GGQFLAPPGAYYQQPGKERQIRAAGHEPHLLARQGILLDGDKGKFLLQVFTKSLFTED
TFFLELIQRQGATGFGQGNIRALWQSVQEQSARSQEA"
BASE COUNT 319 a 507 c 516 g 304 t
ORIGIN
1 gctcggctca ctgagacccg gtggtccaga cgctgctcct ggctggggtg gcgctgcagg
61 gagaaccgcg agctctcagg ggtcggcggg tgacttcttt ccggaagaaa gcgaggaacg
121 cgctctgcgg ggtgagccgg actccccaac tccggacgat cagcccagga ctgagagccc
181 cgaagtcccc aaccacaagt aagcggcccc agaaggacaa gtctaggtcg ccgtccagag
241 cgccatggcc gcgcccgccc ttcgtttgtg ccacatcgcc ttccacgtgc ccgccgggca
301 gcccctagcc cggaacctgc agcgcctctt cggcttccag cccctggctt cgcgggaggt
361 ggacggctgg cggcagctag ccctgcgcag cggcgacgcg gtctttttgg tgaacgaggg
421 cgcagggtct ggagagccgc tgtacggcct ggatccgcgt cacgccgtgc ccagcgccac
481 aaacctgtgc ttcgacgtgg cggacgccgg cgctgcaacc cgggagctgg cagcgctggg
541 ctgcagcgtg cctgtccctc ccgttcgcgt gcgggacgcg cagggtgccg ccacttacgc
601 cgtggtcagc tcgcctgccg gcatcctcag cctgaccttg ctggagcgcg ctggctaccg
661 cggacccttc ctacccggct tcaggcccgt gtcctctgcg cctggccccg ggtgggtcag
721 ccgcgtggac cacctgacct tggcctgcac ccccggcagc tcccccacac ttttgcgctg
781 gttccacgac tgcctgggct tttgccactt gccgctgagc ccaggtgagg atcccgagct
841 gggcctcgaa atgacagcag ggtttgggct tgggggactg aggcttacag ccctgcaggc
901 ccagccgggc agcattgtcc ccactcttgt tctggctgag tcccttccgg gggcgacgac
961 acgacaggac caggtggagc agttcctggc ccggcacaag gggccaggcc tgcagcacgt
1021 ggggctgtat acgcctaaca ttgtggaggc cactgagggg gtggcaactg ctggaggcca
1081 gttcctggct ccccctgggg catactacca gcagccagga aaggagaggc agatccgagc
1141 tgcagggcac gagcctcatc tgcttgctcg acaggggatc ctgctagatg gtgataaagg
1201 caagtttctg cttcaggtct tcaccaagtc cctttttact gaggacactt tcttcctgga
1261 gctgattcag aggcaggggg ccactggctt tggtcagggc aacatcagag ctctgtggca
1321 gtccgtacag gagcaatctg ccaggagcca ggaagcctaa ggatgcccag ggctgggtgc
1381 agccagctgt cctgcagctc tggggagacc agcacagaac tgaggaacat ctgcaggagg
1441 cccaactagt gaaaggcttt gcctccgggg ggcaggtgtg acttccattt catcagtgcc
1501 tgccagaagc tgtgtctctc attgggctcc aaagaggtgg gattttttaa aactaaaaca
1561 tttcttatat acagtctata ataaatatgt aagatacaaa gaacaataaa agaattacac
1621 actaggaaaa aaaaaaaaaa aaaaaa
//