LOCUS BC007092 1356 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens homeobox B13, mRNA (cDNA clone MGC:14711
IMAGE:4250486), complete cds.
ACCESSION BC007092
VERSION BC007092.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1356)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1356)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: m Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70167332.
FEATURES Location/Qualifiers
source 1..1356
/db_xref="H-InvDB:HIT000033042"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14711 IMAGE:4250486"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1356
/gene="HOXB13"
/gene_synonym="PSGD"
/db_xref="GeneID:10481"
/db_xref="HGNC:HGNC:5112"
/db_xref="MIM:604607"
CDS 87..941
/gene="HOXB13"
/gene_synonym="PSGD"
/codon_start=1
/product="homeobox B13"
/protein_id="AAH07092.1"
/db_xref="GeneID:10481"
/db_xref="HGNC:HGNC:5112"
/db_xref="MIM:604607"
/translation="MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMP
AVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQ
AATLAAYPAETPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRH
DSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRK
KRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA
KVKNSATP"
BASE COUNT 307 a 412 c 387 g 250 t
ORIGIN
1 ggattccccc ggcctgggtg gggagagcga gctgggtgcc ccctagattc cccgcccccg
61 cacctcatga gccgaccctc ggctccatgg agcccggcaa ttatgccacc ttggatggag
121 ccaaggatat cgaaggcttg ctgggagcgg gaggggggcg gaatctggtc gcccactccc
181 ctctgaccag ccacccagcg gcgcctacgc tgatgcctgc tgtcaactat gcccccttgg
241 atctgccagg ctcggcggag ccgccaaagc aatgccaccc atgccctggg gtgccccagg
301 ggacgtcccc agctcccgtg ccttatggtt actttggagg cgggtactac tcctgccgag
361 tgtcccggag ctcgctgaaa ccctgtgccc aggcagccac cctggccgcg taccccgcgg
421 agactcccac ggccggggaa gagtacccca gccgccccac tgagtttgcc ttctatccgg
481 gatatccggg aacctaccag cctatggcca gttacctgga cgtgtctgtg gtgcagactc
541 tgggtgctcc tggagaaccg cgacatgact ccctgttgcc tgtggacagt taccagtctt
601 gggctctcgc tggtggctgg aacagccaga tgtgttgcca gggagaacag aacccaccag
661 gtcccttttg gaaggcagca tttgcagact ccagcgggca gcaccctcct gacgcctgcg
721 cctttcgtcg cggccgcaag aaacgcattc cgtacagcaa ggggcagttg cgggagctgg
781 agcgggagta tgcggctaac aagttcatca ccaaggacaa gaggcgcaag atctcggcag
841 ccaccagcct ctcggagcgc cagattacca tctggtttca gaaccgccgg gtcaaagaga
901 agaaggttct cgccaaggtg aagaacagcg ctacccctta agagatctcc ttgcctgggt
961 gggaggagcg aaagtggggg tgtcctgggg agaccaggaa cctgccaagc ccaggctggg
1021 gccaaggact ctgctgagag gcccctagag acaacaccct tcccaggcca ctggctgctg
1081 gactgttcct caggagcggc ctgggtaccc agtatgtgca gggagacgga accccatgtg
1141 acagcccact ccaccagggt tcccaaagaa cctggcccag tcataatcat tcatcctgac
1201 agtggcaata atcacgataa ccagtactag ctgccatgat cgttagcctc atattttcta
1261 tctagagctc tgtagagcac tttagaaacc gctttcatga attgagctaa ttatgaataa
1321 atttggaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
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