LOCUS BC007038 1804 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens lumican, mRNA (cDNA clone MGC:12410 IMAGE:3950745),
complete cds.
ACCESSION BC007038
VERSION BC007038.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1804)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1804)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: g Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 61742794.
FEATURES Location/Qualifiers
source 1..1804
/db_xref="H-InvDB:HIT000033002"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12410 IMAGE:3950745"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1804
/gene="LUM"
/gene_synonym="SLRR2D"
/db_xref="GeneID:4060"
/db_xref="HGNC:HGNC:6724"
/db_xref="MIM:600616"
CDS 142..1158
/gene="LUM"
/gene_synonym="SLRR2D"
/codon_start=1
/product="lumican"
/protein_id="AAH07038.1"
/db_xref="GeneID:4060"
/db_xref="HGNC:HGNC:6724"
/db_xref="MIM:600616"
/translation="MSLSAFTLFLALIGGTSGQYYDYDFPLSIYGQSSPNCAPECNCP
ESYPSAMYCDELKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLL
ENSKIKGRVFSKLKQLKKLHINHNNLTESVGPLPKSLEDLQLTHNKITKLGSFEGLVN
LTFIHLQHNRLKEDAVSAAFKGLKSLEYLDLSFNQIARLPSGLPVSLLTLYLDNNKIS
NIPDEYFKRFNALQYLRLSHNELADSGIPGNSFNVSSLVELDLSYNKLKNIPTVNENL
ENYYLEVNQLEKFDIKSFCKILGPLSYSKIKHLRLDGNRISETSLPPDMYECLRVANE
VTLN"
BASE COUNT 583 a 348 c 310 g 563 t
ORIGIN
1 gtatcactca gaatctggca gccagttccg tcctgacaga gttcacagca tatattggtg
61 gattcttgtc catagtgcat ctgctttaag aattaacgaa agcagtgtca agacagtaag
121 gattcaaacc atttgccaaa aatgagtcta agtgcattta ctctcttcct ggcattgatt
181 ggtggtacca gtggccagta ctatgattat gattttcccc tatcaattta tgggcaatca
241 tcaccaaact gtgcaccaga atgtaactgc cctgaaagct acccaagtgc catgtactgt
301 gatgagctga aattgaaaag tgtaccaatg gtgcctcctg gaatcaagta tctttacctt
361 aggaataacc agattgacca tattgatgaa aaggcctttg agaatgtaac tgatctgcag
421 tggctcattc tagatcacaa ccttctagaa aactccaaga taaaagggag agttttctct
481 aaattgaaac aactgaagaa gctgcatata aaccacaaca acctgacaga gtctgtgggc
541 ccacttccca aatctctgga ggatctgcag cttactcata acaagatcac aaagctgggc
601 tcttttgaag gattggtaaa cctgaccttc atccatctcc agcacaatcg gctgaaagag
661 gatgctgttt cagctgcttt taaaggtctt aaatcactcg aataccttga cttgagcttc
721 aatcagatag ccagactgcc ttctggtctc cctgtctctc ttctaactct ctacttagac
781 aacaataaga tcagcaacat ccctgatgag tatttcaagc gttttaatgc attgcagtat
841 ctgcgtttat ctcacaacga actggctgat agtggaatac ctggaaattc tttcaatgtg
901 tcatccctgg ttgagctgga tctgtcctat aacaagctta aaaacatacc aactgtcaat
961 gaaaaccttg aaaactatta cctggaggtc aatcaacttg agaagtttga cataaagagc
1021 ttctgcaaga tcctggggcc attatcctac tccaagatca agcatttgcg tttggatggc
1081 aatcgcatct cagaaaccag tcttccaccg gatatgtatg aatgtctacg tgttgctaac
1141 gaagtcactc ttaattaata tctgtatcct ggaacaatat tttatggtta tgtttttctg
1201 tgtgtcagtt ttcatagtat ccatatttta ttactgttta ttacttccat gaattttaaa
1261 atctgaggga aatgttttgt aaacatttat tttttttaaa gaaaagatga aaggcaggcc
1321 tatttcatca caagaacaca cacatataca cgaatagaca tcaaactcaa tgctttattt
1381 gtaaatttag tgttttttta tttctactgt caaatgatgt gcaaaacctt ttactggttg
1441 catggaaatc agccaagttt tataatcctt aaatcttaat gttcctcaaa gcttggatta
1501 aatacatatg gatgttactc tcttgcacca aattatcttg atacattcaa atttgtctgg
1561 ttaaaaaata ggtggtagat attgaggcca agaatattgc aaaatacatg aagcttcatg
1621 cacttaaaga agtattttta gaataagaat ttgcatactt acctagtgaa acttttctag
1681 aattattttt cactctaagt catgtatgtt tctctttgat tatttgcatg ttatgtttaa
1741 taagctacta gcaaaataaa acatagcaaa tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaa
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