LOCUS BC006974 1373 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromatin modifying protein 5, mRNA (cDNA clone
MGC:12180 IMAGE:3996277), complete cds.
ACCESSION BC006974
VERSION BC006974.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1373)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 16 Row: b Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20127557.
FEATURES Location/Qualifiers
source 1..1373
/db_xref="H-InvDB:HIT000032961"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12180 IMAGE:3996277"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1373
/gene="CHMP5"
/gene_synonym="CGI-34"
/gene_synonym="HSPC177"
/gene_synonym="PNAS-2"
/db_xref="GeneID:51510"
/db_xref="HGNC:HGNC:26942"
CDS 31..690
/gene="CHMP5"
/gene_synonym="CGI-34"
/gene_synonym="HSPC177"
/gene_synonym="PNAS-2"
/codon_start=1
/product="chromatin modifying protein 5"
/protein_id="AAH06974.1"
/db_xref="GeneID:51510"
/db_xref="HGNC:HGNC:26942"
/translation="MNRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVK
YKDQIKKMREGPAKNMVKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDT
KTTVDAMKLGVKEMKKAYKQVKIDQIEDLQDQLEDMMEDANEIQEALSRSYGTPELDE
DDLEAELDALGDELLADEDSSYLDEAASAPAIPEGVPTDTKNKDGVLVDEFGLPQIPA
S"
BASE COUNT 451 a 218 c 292 g 412 t
ORIGIN
1 agtgtttggg tttcttcgcg gctgctcaag atgaaccgac tcttcgggaa agcgaaaccc
61 aaggctccgc cgcccagcct gactgactgc attggcacgg tggacagtag agcagaatcc
121 attgacaaga agatttctcg attggatgct gagctagtga agtataagga tcagatcaag
181 aagatgagag agggtcctgc aaagaatatg gtcaagcaga aagccttgcg agttttaaag
241 caaaagagga tgtatgagca gcagcgggac aatcttgccc aacagtcatt caacatggaa
301 caagccaatt ataccatcca gtctttgaag gacaccaaga ccacggttga tgctatgaaa
361 ctgggagtaa aggaaatgaa gaaggcatac aagcaagtga agatcgacca gattgaggat
421 ttacaagacc agctagagga tatgatggaa gatgcaaatg aaatccaaga agcactgagt
481 cgcagttatg gcaccccaga actggatgaa gatgatttag aagcagagtt ggatgcacta
541 ggtgatgagc ttctggctga tgaagacagt tcttatttgg atgaggcagc atctgcacct
601 gcaattccag aaggtgttcc cactgataca aagaacaagg atggagttct ggtggatgaa
661 tttggattgc cacagatccc tgcttcatag atttgcatca ttcaagcata tcttgtaaaa
721 caaacacata ttatgggact aggaaatatt tatctttcca aatttgccat aacagattta
781 ggtttctttc ctttctttga aggaaagttt aattacattg ctcttttatt ttttccatta
841 agagactcat tgcttgggaa atgctttctt cgtactaaaa tttgattcct ttttttctta
901 tgaaaaacga actcagttta aaagtatttt tagctcgtat gacttgtttt cattcattaa
961 taataatttg aaataaaact aaggaaatgg aatcttaaaa gtctatgaca gtgtaactct
1021 acagtctcaa aatgacctga taaattgata agacaaagat gagattattg gggctgttca
1081 tattatgatt cagaatcatt ttctattgtg gtattatagg ttggttaaag tgatggcctt
1141 tttgatgggt tttgttgtgt cttgtgaaca agtcgttact gtgtccatta ttggaatgga
1201 attatcacta ctgtatcatg agtgggtatt ttgattctat ggttccctca gtattacatc
1261 ttgacttgta atcaattatg aatatttctt gatatttaat gtataggaca tttatttata
1321 ctcaataaat atttttcaaa aggaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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