LOCUS BC006811 1767 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens peroxisome proliferator-activated receptor gamma, mRNA
(cDNA clone MGC:5041 IMAGE:3447380), complete cds.
ACCESSION BC006811
VERSION BC006811.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1767)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1767)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62865855.
FEATURES Location/Qualifiers
source 1..1767
/db_xref="H-InvDB:HIT000032946"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5041 IMAGE:3447380"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1767
/gene="PPARG"
/gene_synonym="NR1C3"
/gene_synonym="PPARG1"
/gene_synonym="PPARG2"
/db_xref="GeneID:5468"
/db_xref="HGNC:HGNC:9236"
/db_xref="MIM:601487"
CDS 122..1555
/gene="PPARG"
/gene_synonym="NR1C3"
/gene_synonym="PPARG1"
/gene_synonym="PPARG2"
/codon_start=1
/product="peroxisome proliferator-activated receptor
gamma"
/protein_id="AAH06811.1"
/db_xref="GeneID:5468"
/db_xref="HGNC:HGNC:9236"
/db_xref="MIM:601487"
/translation="MTMVDTEMPFWPTNFGISSVDLSVMEDHSHSFDIKPFTTVDFSS
ISTPHYEDIPFTRTDPVVADYKYDLKLQEYQSAIKVEPASPPYYSEKTQLYNKPHEEP
SNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRN
KCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHL
YDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKE
VAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLM
NKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVII
LSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHV
QLLQVIKKTETDMSLHPLLQEIYKDLY"
BASE COUNT 539 a 407 c 372 g 449 t
ORIGIN
1 ccagaagcct gcatttctgc attctgctta attccctttc cttagatttg aaagaagcca
61 acactaaacc acaaatatac aacaaggcca ttttctcaaa cgagagtcag cctttaacga
121 aatgaccatg gttgacacag agatgccatt ctggcccacc aactttggga tcagctccgt
181 ggatctctcc gtaatggaag accactccca ctcctttgat atcaagccct tcactactgt
241 tgacttctcc agcatttcta ctccacatta cgaagacatt ccattcacaa gaacagatcc
301 agtggttgca gattacaagt atgacctgaa acttcaagag taccaaagtg caatcaaagt
361 ggagcctgca tctccacctt attattctga gaagactcag ctctacaata agcctcatga
421 agagccttcc aactccctca tggcaattga atgtcgtgtc tgtggagata aagcttctgg
481 atttcactat ggagttcatg cttgtgaagg atgcaagggt ttcttccgga gaacaatcag
541 attgaagctt atctatgaca gatgtgatct taactgtcgg atccacaaaa aaagtagaaa
601 taaatgtcag tactgtcggt ttcagaaatg ccttgcagtg gggatgtctc ataatgccat
661 caggtttggg cggatgccac aggccgagaa ggagaagctg ttggcggaga tctccagtga
721 tatcgaccag ctgaatccag agtccgctga cctccgggcc ctggcaaaac atttgtatga
781 ctcatacata aagtccttcc cgctgaccaa agcaaaggcg agggcgatct tgacaggaaa
841 gacaacagac aaatcaccat tcgttatcta tgacatgaat tccttaatga tgggagaaga
901 taaaatcaag ttcaaacaca tcacccccct gcaggagcag agcaaagagg tggccatccg
961 catctttcag ggctgccagt ttcgctccgt ggaggctgtg caggagatca cagagtatgc
1021 caaaagcatt cctggttttg taaatcttga cttgaacgac caagtaactc tcctcaaata
1081 tggagtccac gagatcattt acacaatgct ggcctccttg atgaataaag atggggttct
1141 catatccgag ggccaaggct tcatgacaag ggagtttcta aagagcctgc gaaagccttt
1201 tggtgacttt atggagccca agtttgagtt tgctgtgaag ttcaatgcac tggaattaga
1261 tgacagcgac ttggcaatat ttattgctgt cattattctc agtggagacc gcccaggttt
1321 gctgaatgtg aagcccattg aagacattca agacaacctg ctacaagccc tggagctcca
1381 gctgaagctg aaccaccctg agtcctcaca gctgtttgcc aagctgctcc agaaaatgac
1441 agacctcaga cagattgtca cggaacacgt gcagctactg caggtgatca agaagacgga
1501 gacagacatg agtcttcacc cgctcctgca ggagatctac aaggacttgt actagcagag
1561 agtcctgagc cactgccaac atttcccttc ttccagttgc actattctga gggaaaatct
1621 gacacctaag aaatttactg tgaaaaagca ttttaaaaag aaaaggtttt agaatatgat
1681 ctattttatg catattgttt ataaagacac atttacaatt tacttttaat attaaaaatt
1741 accatattat gaaaaaaaaa aaaaaaa
//