LOCUS BC006317 2788 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens solute carrier family 18 (vesicular monoamine), member
1, mRNA (cDNA clone MGC:12717 IMAGE:4125784), complete cds.
ACCESSION BC006317
VERSION BC006317.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2788)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2788)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006317.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: g Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506986.
FEATURES Location/Qualifiers
source 1..2788
/db_xref="H-InvDB:HIT000032752"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12717 IMAGE:4125784"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2788
/gene="SLC18A1"
/gene_synonym="CGAT"
/gene_synonym="VAT1"
/gene_synonym="VMAT1"
/db_xref="GeneID:6570"
/db_xref="MIM:193002"
CDS 381..1862
/gene="SLC18A1"
/gene_synonym="CGAT"
/gene_synonym="VAT1"
/gene_synonym="VMAT1"
/codon_start=1
/product="SLC18A1 protein"
/protein_id="AAH06317.1"
/db_xref="GeneID:6570"
/db_xref="MIM:193002"
/translation="MLRPILDAPQRLLKEGRASRQLVLVVVFVALLLDNMLFTVVVPI
VPTFLYDMEFKEVNSSLHLGHAGSSPHALASPAFSTIFSFFNNNTVAVEESVPSGIAW
MNDTASTIPPPATEAISAHKNNCLQGTGFLEEETTRVGVLFASKAVMQLLVNPFVGPL
TNRIGYHIPMFAGFVIMFLSTVMFAFSGTYTLLFVARTLQGIGSSFSSVAGLGMLASV
YTDDHERGRAMGTALGGLALGLLVGAPFGSVMYEFVGKSAPFLILAFLALLDGALQLC
ILQPSKVSPESAKGTPLFMLLKDPYILVAAGLAFLPASVSYLIGTNLFGVLANKMGRW
LCSLIGMLVVGTSLLCVPLAHNIFGLIGPNAGLGLAIGMVDSSMMPIMGHLVDLRHTS
VYGSVYAIADVAFCMGFAIGPSTGGAIVKAIGFPWLMVITGVINIVYAPLCYYLRSPP
AKEEKLAILSQDCPMETRMYATQKPTKEFPLGEDSDEEPDHEE"
misc_feature 765..1010
/gene="SLC18A1"
/gene_synonym="CGAT"
/gene_synonym="VAT1"
/gene_synonym="VMAT1"
/note="sugar_tr; Region: Sugar (and other) transporter"
/db_xref="CDD:pfam00083"
BASE COUNT 620 a 717 c 664 g 787 t
ORIGIN
1 gctaacagct gccaatacct cactgagtgc ctcacaccaa catgggctcc aagatgaagg
61 catctttctg atcaggggtt tgtagctcaa acaaaagaat gagcgtgctt ctagaaccac
121 agagcaaggg aacatggtag aggataagct ggcaagttga aaagcgtggg atttcatcca
181 agtttgacac taactgtgca accccaaaca aatctcctaa ccttcagagg ctcggatttc
241 ttgtctatga gatgaagtga gtttcattcg tctgggcaga ctccctcccc tcttccataa
301 aggctgcagg agacctgtag ctgtcacagg accttcccta agagcccgca ggggaagact
361 gccccagtcc ggccatcacc atgctccggc ccattctgga tgctccccag cggttgctga
421 aggaggggag agcgtcccgg cagctggtgc tggtggtggt attcgtcgct ttgctcctgg
481 acaacatgct gtttactgtg gtggtgccaa ttgtgcccac cttcctatat gacatggagt
541 tcaaagaagt caactcttct ctgcacctcg gccatgccgg aagttcccca catgccctcg
601 cctctcctgc cttttccacc atcttctcct tcttcaacaa caacaccgtg gctgttgaag
661 aaagcgtacc tagtggaata gcatggatga atgacactgc cagcaccatc ccacctccag
721 ccactgaagc catctcagct cataaaaaca actgcttgca aggcacaggt ttcttggagg
781 aagagactac ccgggtcggg gttctgtttg cttcaaaggc tgtgatgcaa cttctggtca
841 acccattcgt gggccctctc accaacagga ttggatatca tatccccatg tttgctggct
901 ttgttatcat gtttctctcc acagttatgt ttgctttttc tgggacctat actctactct
961 ttgtggcccg aacccttcaa ggcattggat cttcattttc atctgttgca ggtcttggaa
1021 tgctggccag tgtctacact gatgaccatg agagaggacg agccatggga actgctctgg
1081 ggggcctggc cttggggttg ctggtgggag ctccctttgg aagtgtaatg tacgagtttg
1141 ttgggaagtc tgcacccttc ctcatcctgg ccttcctggc actactggat ggagcactcc
1201 agctttgcat cctacagcct tccaaagtct ctcctgagag tgccaagggg actcccctct
1261 ttatgcttct caaagaccct tacatcctgg tggctgcagg tctagctttc ttgcctgcca
1321 gtgtgtccta cctcattggc accaacctct ttggtgtgtt ggccaacaag atgggtcggt
1381 ggctgtgttc cctaatcggg atgctggtag taggtaccag cttgctctgt gttcctctgg
1441 ctcacaatat ttttggtctc attggcccca atgcagggct tggccttgcc ataggcatgg
1501 tggattcttc tatgatgccc atcatggggc acctggtgga tctacgccac acctcggtgt
1561 atgggagtgt ctacgccatc gctgatgtgg ctttttgcat gggctttgct ataggtccat
1621 ccaccggtgg tgccattgta aaggccatcg gttttccctg gctcatggtc atcactgggg
1681 tcatcaacat cgtctatgct ccactctgct actacctgcg gagccccccg gcaaaggaag
1741 agaagcttgc tattctgagt caggactgcc ccatggagac ccggatgtat gcaacccaga
1801 agcccacgaa ggaatttcct ctgggggagg acagtgatga ggagcctgac catgaggagt
1861 agcagcagaa ggtgctcctt gaattcatga tgcctcagtg accacctctt tccctgggac
1921 cagatcacca tggctgagcc cacggctcag tgggcttcac atacctctgc ctgggaatct
1981 tctttcctcc cctcccatgg acactgtccc tgatactctt ctcacctgtg taacttgtag
2041 ctcttcctct atgccttggt gccgcagtgg cccatctttt atgggaagac agagtgatgc
2101 accttcccgc tgctgtgagg ttgattaaac ttgagctgtg acgggttctg caaggggtga
2161 ctcattgcat agaggtggta gtgagtaatg tgcccctgaa accagtgggg tgactgacaa
2221 gcctctttaa tctgttgcct gattttctct ggcatagtcc caacagatcg gaagagtgtt
2281 accctctttt cctcaacgtg ttctttcccg ggttttccca gccgagttga gaaaatgttc
2341 tcagcattgt cttgctgcca aatgccagct tgaagagttt tgttttgttt tttttccatt
2401 tatttttttt tttaataaag tgagtgattt ttctgtggct aaatctagag ctgctaaaag
2461 ggctttaccc tcagtgaaaa gtgtcttcta ttttcattat ctttcagaaa caggagccca
2521 tttctcttct gctggagtta ttgacattct cctgacctcc cctgtgtgtt cctacctttt
2581 ctgaacctct tagactctta gaaataaaag tagaagaaag acagaaaaaa taactgatta
2641 gacccaagat ttcatgggaa gaagttaaaa gaaactgcct tgaaatccct cctgattgta
2701 gatttcctaa taggaggggt gtaatgtgac attgttcata cttgctaata aatacattat
2761 tgcctaattc aaaaaaaaaa aaaaaaaa
//