LOCUS BC006296 1828 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens activation-induced cytidine deaminase, mRNA (cDNA
clone MGC:12911 IMAGE:4054915), complete cds.
ACCESSION BC006296
VERSION BC006296.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1828)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1828)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (09-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC006296.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 17 Row: a Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10190699.
FEATURES Location/Qualifiers
source 1..1828
/db_xref="H-InvDB:HIT000032736"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12911 IMAGE:4054915"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1828
/gene="AICDA"
/gene_synonym="AID"
/gene_synonym="ARP2"
/gene_synonym="CDA2"
/gene_synonym="HIGM2"
/db_xref="GeneID:57379"
/db_xref="HGNC:HGNC:13203"
/db_xref="MIM:605257"
CDS 77..673
/gene="AICDA"
/gene_synonym="AID"
/gene_synonym="ARP2"
/gene_synonym="CDA2"
/gene_synonym="HIGM2"
/codon_start=1
/product="activation-induced cytidine deaminase"
/protein_id="AAH06296.1"
/db_xref="GeneID:57379"
/db_xref="HGNC:HGNC:13203"
/db_xref="MIM:605257"
/translation="MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSL
DFGYLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNP
NLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFK
AWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL"
BASE COUNT 528 a 385 c 416 g 499 t
ORIGIN
1 gaaccatcat taattgaagt gagatttttc tggcctgaga cttgcaggga ggcaagaaga
61 cactctggac accactatgg acagcctctt gatgaaccgg aggaagtttc tttaccaatt
121 caaaaatgtc cgctgggcta agggtcggcg tgagacctac ctgtgctacg tagtgaagag
181 gcgtgacagt gctacatcct tttcactgga ctttggttat cttcgcaata agaacggctg
241 ccacgtggaa ttgctcttcc tccgctacat ctcggactgg gacctagacc ctggccgctg
301 ctaccgcgtc acctggttca cctcctggag cccctgctac gactgtgccc gacatgtggc
361 cgactttctg cgagggaacc ccaacctcag tctgaggatc ttcaccgcgc gcctctactt
421 ctgtgaggac cgcaaggctg agcccgaggg gctgcggcgg ctgcaccgcg ccggggtgca
481 aatagccatc atgaccttca aagattattt ttactgctgg aatacttttg tagaaaacca
541 tgaaagaact ttcaaagcct gggaagggct gcatgaaaat tcagttcgtc tctccagaca
601 gcttcggcgc atccttttgc ccctgtatga ggttgatgac ttacgagacg catttcgtac
661 tttgggactt tgatagcaac ttccaggaat gtcacacacg atgaaatatc tctgctgaag
721 acagtggata aaaaacagtc cttcaagtct tctctgtttt tattcttcaa ctctcacttt
781 cttagagttt acagaaaaaa tatttatata cgactcttta aaaagatcta tgtcttgaaa
841 atagagaagg aacacaggtc tggccaggga cgtgctgcaa ttggtgcagt tttgaatgca
901 acattgtccc ctactgggaa taacagaact gcaggacctg ggagcatcct aaagtgtcaa
961 cgtttttcta tgacttttag gtaggatgag agcagaaggt agatcctaaa aagcatggtg
1021 agaggatcaa atgtttttat atcaacatcc tttattattt gattcatttg agttaacagt
1081 ggtgttagtg atagattttt ctattctttt cccttgacgt ttactttcaa gtaacacaaa
1141 ctcttccatc aggccatgat ctataggacc tcctaatgag agtatctggg tgattgtgac
1201 cccaaaccat ctctccaaag cattaatatc caatcatgcg ctgtatgttt taatcagcag
1261 aagcatgttt ttatgtttgt acaaaagaag attgttatgg gtggggatgg aggtatagac
1321 catgcatggt caccttcaag ctactttaat aaaggatctt aaaatgggca ggaggactgt
1381 gaacaagaca ccctaataat gggttgatgt ctgaagtagc aaatcttctg gaaacgcaaa
1441 ctcttttaag gaagtcccta atttagaaac acccacaaac ttcacatatc ataattagca
1501 aacaattgga aggaagttgc ttgaatgttg gggagaggaa aatctattgg ctctcgtggg
1561 tctcttcatc tcagaaatgc caatcaggtc aaggtttgct acattttgta tgtgtgtgat
1621 gcttctccca aaggtatatt aactatataa gagagttgtg acaaaacaga atgataaagc
1681 tgcgaaccgt ggcacacgct catagttcta gctgcttggg aggttgagga gggaggatgg
1741 cttgaacaca ggtgttcaag gccagcctgg gcaacataac aagatcctgt ctctcaaaaa
1801 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//