LOCUS BC006108 3390 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens G patch domain containing 1, mRNA (cDNA clone
MGC:12961 IMAGE:3029084), complete cds.
ACCESSION BC006108
VERSION BC006108.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3390)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3390)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361683.
FEATURES Location/Qualifiers
source 1..3390
/db_xref="H-InvDB:HIT000032610"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12961 IMAGE:3029084"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3390
/gene="GPATC1"
/gene_synonym="ECGP"
/gene_synonym="FLJ10206"
/gene_synonym="FLJ38686"
/db_xref="GeneID:55094"
/db_xref="HGNC:HGNC:24658"
CDS 315..3110
/gene="GPATC1"
/gene_synonym="ECGP"
/gene_synonym="FLJ10206"
/gene_synonym="FLJ38686"
/codon_start=1
/product="G patch domain containing 1"
/protein_id="AAH06108.1"
/db_xref="GeneID:55094"
/db_xref="HGNC:HGNC:24658"
/translation="MAARDSDSEEDLVSYGTGLEPLEEGERPKKPIPLQDQTVRDEKG
RYKRFHGAFSGGFSAGYFNTVGSKEGWTPSTFVSSRQNRADKSVLGPEDFMDEEDLSE
FGIAPKAIVTTDDFASKTKDRIREKARQLAAATAPIPGATLLDDLITPAKLSVGFELL
RKMGWKEGQGVGPRVKRRPRRQKPDPGVKIYGCALPPGSSEGSEGEDDDYLPDNVTFA
PKDVTPVDFTPKDNVHGLAYKGLDPHQALFGTSGEHFNLFSGGSERAGDLGEIGLNKG
RKLGISGQAFGVGALEEEDDDIYATETLSKYDTVLKDEEPGDGLYGWTAPRQYKNQKE
SEKDLRYVGKILDGFSLASKPLSSKKIYPPPELPRDYRPVHYFRPMVAATSENSHLLQ
VLSESAGKATPDPGTHSKHQLNASKRAELLGETPIQGSATSVLEFLSQKDKERIKEMK
QATDLKAAQLKARSLAQNAQSSRAQLSPAAAAGHCSWNMALGGGTATLKASNFKPFAK
DPEKQKRYDEFLVHMKQGQKDALERCLDPSMTEWERGRERDEFARAALLYASSHSTLS
SRFTHAKEEDDSDQVEVPRDQENDVGDKQSAVKMKMFGKLTRDTFEWHPDKLLCKRFN
VPDPYPDSTLVGLPRVKRDKYSVFNFLTLPETASLPTTQASSEKVSQHRGPDKSRKPS
RWDTSKHEKKEDSISEFLSLARSKAEPPKQQSSPLVNKEEEHAPELSANQTVNKDVDA
QAEGEGSRPSMDLFRAIFASSSDEKSSSSEDEQGDSEDDQAGSGEANFQSSQDTDLGE
TSSVAHALVPAPQEPPPSFPIQKMQIDEREEFGPRLPPVFCPNARQTLEVPQKEKHKK
NKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKPEKSSSSESSDSSDSQSDEETADV
SPQELLRRLKSLPLRRQ"
BASE COUNT 1019 a 809 c 865 g 697 t
ORIGIN
1 caggcatcgg tgtcgcctcg cagggaacag ttgggtggct tccagcttat gccaggagtc
61 tcctcctcac ccgcacatcg cggggctagg atgggatgtc gtggctgcca aatcctccga
121 ggcaactcct gcctgggacg gcctaccaca ggatgggcct gagaatccgg agcgcaggct
181 cgggccgcta ggacaccttc ccccgcccgc ggacccagcc ttccagcatc accggggttc
241 gcggaggaga aagaggaaag gcgtttggcc tgccaaggcc gccgtagcga gggggcgggg
301 cccggaagag caggatggcg gcgcgggaca gtgacagcga agaagatctg gtcagctatg
361 ggaccgggct ggagcctctg gaagaaggtg aaagaccaaa gaaaccaatc cctcttcagg
421 atcagactgt cagagatgaa aaaggaaggt ataaacgatt ccacggggcc tttagtggag
481 gtttctctgc tggatacttc aatactgttg gctcaaaaga aggatggaca ccctctacct
541 ttgtgtcttc acgacagaac agagcagaca aatctgttct tggtcctgaa gattttatgg
601 atgaagagga tcttagtgaa tttgggatag cacctaaagc gattgtcacc acagacgatt
661 ttgcctccaa aaccaaagac agaatacgag aaaaggctag gcagttggcc gctgctactg
721 cccctattcc tggagccacc ctccttgatg acctcataac gccagcaaaa ttatctgttg
781 gtttcgaatt gctaagaaaa atgggttgga aagaaggaca aggagttggt cctcgagtaa
841 agagacggcc acgccgacag aaacctgatc ctggagtcaa aatctatggc tgtgcattac
901 cccctggaag ctcggaagga tctgagggtg aagatgatga ctacttgcct gataatgtga
961 cctttgcacc caaagatgtc acacctgtgg atttcacacc taaagataat gtgcatggtc
1021 tagcttacaa gggcctggat ccccaccagg cactgtttgg aacttcggga gaacatttta
1081 atcttttcag tggtggttct gagagagctg gcgatcttgg agaaattgga ctgaataaag
1141 gaagaaaatt gggaatttca ggccaggctt ttggtgtagg tgccctggaa gaggaagatg
1201 atgatatcta tgccacagaa actctatcca agtatgacac tgttctgaag gacgaggagc
1261 ctggagacgg actctatggc tggacagcac ccaggcagta taaaaaccag aaagaatcag
1321 agaaagacct tcggtacgtt ggcaaaattt tggatggatt ttccttggct tctaaacctt
1381 tatcttctaa gaaaatctat ccacctccag agctgccaag agactatcga ccagtgcatt
1441 atttcagacc catggtggcc gccacctccg agaactcaca cttactgcag gtattatcag
1501 agtcagctgg aaaggcaacg cctgacccag ggacacacag taagcaccaa ctgaatgcct
1561 ccaaacgggc tgagttgctt ggagagacgc ctattcaagg ttcagctact tcagtgttag
1621 aatttctgtc ccaaaaagac aaagagagaa tcaaagaaat gaagcaggca actgacctga
1681 aagcagctca gctcaaggcc aggagtctgg cccagaacgc tcagagcagc agagcccagc
1741 tctcccctgc agcggctgct gggcactgct cttggaacat ggcattaggt ggtgggacgg
1801 ccaccttaaa agccagcaac ttcaagcctt tcgccaaaga tccggaaaag caaaagcgat
1861 acgacgagtt cttagtacac atgaaacagg gtcagaaaga tgctctggaa cgctgtctgg
1921 accccagcat gacagagtgg gagcgaggcc gtgagcggga tgagtttgcc cgggcggccc
1981 tgctgtacgc atcttcccat tcgaccttgt cctccaggtt cactcacgcc aaggaggagg
2041 atgactcaga tcaggttgaa gtccctcgag accaagagaa tgatgtcggg gataagcagt
2101 cggctgtgaa gatgaagatg tttgggaagc tcacccgaga cacgtttgag tggcaccctg
2161 acaagcttct atgtaagaga tttaatgtcc ctgaccctta tccagattca actttagttg
2221 gcttaccaag agtgaagcgt gacaagtact cagtcttcaa ctttctgacg ctcccagaga
2281 cagcttcctt gcccaccact caagcatcaa gtgaaaaagt atcacagcac cgaggtcccg
2341 acaaatcaag aaaaccatcc agatgggata cctctaaaca cgaaaagaaa gaagattcca
2401 ttagtgaatt tttaagtttg gctagatcaa aagccgagcc acctaaacaa cagtccagcc
2461 ccttagtaaa caaagaggaa gagcatgcac cagaattatc cgcaaatcag accgtcaaca
2521 aagatgtgga cgcacaggct gaaggagaag ggagccgccc atccatggac ttattcaggg
2581 ccatctttgc cagttcctca gatgaaaagt cctcatcctc cgaggatgag caaggtgaca
2641 gtgaagatga tcaggcaggc tctggggagg ccaacttcca aagctcccaa gacactgact
2701 tgggggaaac atcatctgtg gctcacgctc ttgtgccagc accccaggag ccgccacctt
2761 ccttcccgat acaaaagatg cagatagatg aaagagaaga gttcggcccg cggctgcctc
2821 ccgtcttctg ccccaatgct cgtcagacac ttgaggttcc tcaaaaagag aaacataaaa
2881 agaacaaaga caagcacaag gccaagaaag agcacaggcg gaagaaagag aagaaaaaga
2941 aacacaggaa gcacaaacac aaaggcaagc aaaagaataa aaaaccagag aaaagtagta
3001 gctccgagag ttccgacagc agcgacagcc agagtgacga ggaaaccgca gacgtgtcgc
3061 cccaggagct gctgagacgg ctgaaaagtc ttccactaag aaggcagtaa ttgaatgctg
3121 ccctggctcg tcctagaatc atttctcctc catgatggaa gcccagtgat tgttcagtta
3181 acgcattgta cagagtgtat ttatatgtaa attcctgctg taaaataatt tttaaaacct
3241 tgacatttca aagactgcct tgaaaggtcg cagaaattga tttctatttt taatttcagt
3301 tagtatcggg ggaaaaaaat ccagactgaa cagtttaatt aaagtggaat ttttctattt
3361 tcaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//