LOCUS BC006080 2453 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens linker for activation of T cells family, member 2,
mRNA (cDNA clone IMAGE:3621218), with apparent retained intron.
ACCESSION BC006080
VERSION BC006080.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2453)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2453)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14702181
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2453
/db_xref="H-InvDB:HIT000032589"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3621218"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 630 a 659 c 725 g 439 t
ORIGIN
1 aggaagcccg ccctgcccgc ccgccagtgt cagtggtgtt ggcatcagct tgggcaggtg
61 tgcgggctca ggatggggcg gccgtggtga ggaaccctgg actctcagca tcacaagagg
121 caacaccagg agccaacatg agctcgggga ctgaactgct gtggcccgga gcagcgctgc
181 tggtgctgtt gggggtggca gccagtctgt gtgtgcgctg ctcacgccca ggtgcaaaga
241 ggtcagagaa aatctaccag cagagaagtc tgcgtgagga ccaacagagc tttacggggt
301 cccggaccta ctccttggtc gggcaggcat ggccaggacc cctggcggac atggcaccca
361 caaggaagga caagctgttg caattctacc ccagcctgga ggatccagca tcttccaggt
421 accagaactt cagcaaagga agcagacacg ggtcggagga agcctacata gaccccattg
481 ccatggagta ttacaactgg gggcggttct cgaagccccc agaagatgat gatgccaatt
541 cctacgagaa tgtgctcatt tgcaagcaga aaaccacaga gacaggtgcc cagcaggagg
601 gcataggtgg cctctgcaga ggggacctca gcctgtcact ggccctgaag actggcccca
661 cttctggtct ctgtccctct gcctccccgg aagaagatga ggaatctgag gattatcaga
721 actcagcatc catccatcag tggcgcgagt ccaggaaggt catggggcaa ctccagagag
781 aagcatcccc tggcccggtg ggaagcccag acgaggagga cggggaaccg gattacgtga
841 atggggaggt ggcagccaca gaagcctagg gcagaccaag aagaaagggg cgtcaggcag
901 ggaattctgg tgacttcagg ggcaaagaag tgggcaccgg gtgggtctcc caactccact
961 gcatcctcct ggctgcgacc ttggaccaag tgacaacctc ccagaactta gttcctcact
1021 tggtgcccac ctctcagaga agacatcgca cacacggccg ggcacggtgg ctcacgcctg
1081 taatcccggc actttgggag gccgaggcag gcagatcacc tgaggtcacg agttcgagac
1141 cagcctggcc aacatggtga aacttcatct ctactaaaaa cacaaaaaat tagccaggca
1201 tggtggtggg tgcctgtagt cccagttagt tgggaggctg aggcaggaga atcatttgaa
1261 ccctgaaggc ggaggttgcg gtgagttaag atcacatgca ctcaaccctg ggtgacagag
1321 cgagactccg tctcaataaa taaataaaaa aacagacatt gcacacaaag cctcagccca
1381 gcaggcactc ggtcaatgct ggaaacagac aggaggcagg gacgttggga aatgtaacag
1441 tggctgagac gcgctgagga gccaccgcag gccagtgaga tggtgcggcg ctaagcgctc
1501 acacgtgcac catctcttag cacccaaagc cacagagcag ttaagccacc tgcccaaggc
1561 cacatcttga agtaagggga ggaggagatg gaatccccag tggtcagaca tcagacatca
1621 aagcctaggc tgggtctact gcttgggaag cacgatggac ccccagaggg ccttgaaggc
1681 tgcccaaagt ccccatctgg gagacccagg ccgtcatctc agcgagcagg ctggagggtg
1741 gaaaccacag tgaacctggg tggtcaagag tcagccccag aggcaggtgc aggagtttga
1801 gccaaatgtg cagagcccca cgtcattcat tcaaccagta tccactgggc ccctgctacg
1861 ggcaagtcct gctctaggtg ctgggaacac caacataaag aacagcaaac ccctgacccc
1921 ttagaacttg cattctggta ggagagagaa aacagatagg gctggacaca gcggtcatgc
1981 ctataaatcc cagcacttcg ggaggctgag gcgggaggat cctttgagcc tctgagtttg
2041 aggccagcct gggcaacata gcaagacctc tctctctgca aaaacttttt tttttttttt
2101 ttgagacaga gtatcactgt cactcaggct ggagtgcagt ggcgccatct cggctcactg
2161 caacctccac ctcctgggtt caagcgattc tcgtgcctca gccttccaag tagctgggat
2221 tacaggcaca cgccaccatg tccagcctct ataaaaacat ttaaaattag ccaggcatgg
2281 tggtggatgc cctagagtcc cactgacttg ggaggctgag gtgggaagat cgcttgagcc
2341 tgggaggtca aggttgcaat gagccatggt tgctgcagtg agctgtggtc gtgccactgc
2401 actcaagcct gggcaacaga gcaagacccc atctcaaaaa aaaaaaaaaa aaa
//