LOCUS BC005994 1175 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PHD finger protein 6, mRNA (cDNA clone MGC:14797
IMAGE:4064169), complete cds.
ACCESSION BC005994
VERSION BC005994.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1175)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1175)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62865859.
FEATURES Location/Qualifiers
source 1..1175
/db_xref="H-InvDB:HIT000032577"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14797 IMAGE:4064169"
/tissue_type="Bone marrow, chronic myelogenous leukemia"
/clone_lib="NIH_MGC_54"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1175
/gene="PHF6"
/gene_synonym="MGC14797"
/db_xref="GeneID:84295"
/db_xref="HGNC:HGNC:18145"
/db_xref="MIM:300414"
CDS 142..1080
/gene="PHF6"
/gene_synonym="MGC14797"
/codon_start=1
/product="PHD finger protein 6"
/protein_id="AAH05994.1"
/db_xref="GeneID:84295"
/db_xref="HGNC:HGNC:18145"
/db_xref="MIM:300414"
/translation="MSSSVEQKKGPTRQRKCGFCKSNRDKECGQLLISENQKVAAHHK
CMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRT
YHYHCALHDKAQIREKPSQGIYMAYCRKHKKTAHNSEAADLEESFNEHELEPSSPKSK
KKSRKGRPRKTNFKGLSEDTRSTSSHGTDEMESSSYRDRSPHRSSPSDTRPKCGFCHV
GEEENEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRG
KRMVCSFYICYATLHLICCFKFRVHPKFIQSSENLK"
BASE COUNT 412 a 222 c 240 g 301 t
ORIGIN
1 cccgctctca ggcactgctg gagaaccgag accgacttct ttctctttac cctcattggc
61 gcttctctcc tgcagtccgc ctctgggccc tgccgcattt cttgagactt aaagtggcat
121 tctaaaggca atttaaaaat catgtcaagc tcagttgaac agaaaaaagg gcctacaaga
181 cagcgcaaat gtggcttttg taagtcaaat agagacaagg aatgtggaca gttactaata
241 tctgaaaacc agaaggtggc agcgcaccat aagtgcatgc tcttttcatc tgctttggta
301 tcatcacact ctgataatga aagtcttggt ggattttcta ttgaagatgt ccaaaaggaa
361 attaaaagag gcacgaagct gatgtgttct ttgtgccatt gtcctggagc aacaattggt
421 tgtgatgtga aaacatgtca caggacatac cactaccact gtgcattgca tgataaagct
481 caaatacgag agaaaccttc acaaggaatt tacatggcct attgccgaaa acacaagaaa
541 actgcacata actccgaagc agctgattta gaagaaagtt ttaatgaaca tgaactggag
601 ccctcatcac ctaaaagtaa aaagaaaagt cgcaaaggaa ggccaagaaa aactaatttt
661 aaagggctgt cagaagatac caggtccaca tcctcccatg gaacagatga aatggaaagt
721 agttcctata gagataggtc tccacacaga agcagcccta gtgacaccag gcctaaatgt
781 ggattttgcc atgtagggga ggaagaaaat gaagcacgag gaaaactgca tatatttaat
841 gccaagaagg cagctgccca ttataagtgc atgttgtttt cttctggcac agtccagctc
901 acaacaacat caagagcaga atttggagac tttgatatta aaactgtact tcaggagatt
961 aaacgaggaa aaagaatggt ctgtagtttt tatatttgtt atgcaacatt acacttgatt
1021 tgctgcttta aatttagagt acatcccaaa tttatccagt catcagaaaa tttaaagtag
1081 ttcgtatgtt aaagcaaagt atatatttga cttatttgta atataataaa ggatgctgat
1141 gttacggaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//