LOCUS BC005937 1833 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens Vps20-associated 1 homolog (S. cerevisiae), mRNA (cDNA
clone MGC:14555 IMAGE:4081455), complete cds.
ACCESSION BC005937
VERSION BC005937.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1833)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1833)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 21 Row: i Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361740.
FEATURES Location/Qualifiers
source 1..1833
/db_xref="H-InvDB:HIT000032536"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:14555 IMAGE:4081455"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1833
/gene="VTA1"
/gene_synonym="DRG-1"
/gene_synonym="DRG1"
/gene_synonym="HSPC228"
/gene_synonym="LIP5"
/gene_synonym="My012"
/gene_synonym="SBP1"
/db_xref="GeneID:51534"
/db_xref="HGNC:HGNC:20954"
/db_xref="MIM:610902"
CDS 12..935
/gene="VTA1"
/gene_synonym="DRG-1"
/gene_synonym="DRG1"
/gene_synonym="HSPC228"
/gene_synonym="LIP5"
/gene_synonym="My012"
/gene_synonym="SBP1"
/codon_start=1
/product="VTA1 protein"
/protein_id="AAH05937.1"
/db_xref="GeneID:51534"
/db_xref="HGNC:HGNC:20954"
/db_xref="MIM:610902"
/translation="MAALAPLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQ
TGMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYAD
NEDRAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGE
TPQAGPVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGA
HAPANTPAEVPHSTGVASNTIQPTPQTIPAIDPALFNTISQGDVRLTPEDFARAQKYC
KYAGSALQYEDVSTAVQNLQKALKLLTTGRE"
BASE COUNT 618 a 335 c 357 g 523 t
ORIGIN
1 cgggagtaga gatggccgcg cttgcaccgc tgcccccgct ccccgcacag ttcaagagca
61 tacagcatca tctgaggacg gctcaggagc atgacaagcg agaccctgtg gtggcttatt
121 actgtcgttt atacgcaatg cagactggaa tgaagatcga tagtaaaact cctgaatgtc
181 gcaaattttt atcaaagtta atggatcagt tagaagctct aaagaagcag ttgggtgata
241 atgaagctat tactcaagaa atagtgggct gtgcccattt ggagaattat gctttgaaaa
301 tgtttttgta tgcagacaat gaagatcgtg ctggacgatt tcacaaaaac atgatcaagt
361 ccttctatac tgcaagtctt ttgatagatg tcataacagt atttggagaa ctcactgatg
421 aaaatgtgaa acacaggaag tatgccagat ggaaggcaac atacatccat aattgtttaa
481 agaatgggga gactcctcaa gcaggccctg ttggaattga agaagataat gatattgaag
541 aaaatgaaga tgctggagca gcctctctgc ccactcagcc aactcagcca tcatcatctt
601 caacttatga cccaagcaac atgccatcag gcaactatac tggaatacag attcctccgg
661 gtgcacacgc tccagctaat acaccagcag aagtgcctca cagcacaggt gtagcaagta
721 atactatcca acctactcca cagactatac ctgccattga tcccgcactt ttcaatacaa
781 tttcccaggg ggatgttcgt ctaaccccag aagactttgc tagagctcag aagtactgca
841 aatatgctgg cagtgctttg cagtatgaag atgtaagcac tgctgtccag aatctacaaa
901 aggctctcaa gttactgacg acaggcagag aatgaagcct ttgtatgaca gacccatgta
961 tttttggcat gaggaactaa cagtccatta ctctatcttc agcctatcag gatcacagtt
1021 ttcattgtcc atttactaga ttcaatcgtc tctgagtata tagggctgat gttagcaaga
1081 ccctaaaaat gtccattgaa ccctgcttca aaaaatgaaa acacacctct ataaaatgtg
1141 tactgggaat aagctttgta tttacataca ttaggggaat tttttaaaat ctgtaatgtt
1201 tggacaaaca gatgatatta ctttgctata aaattataaa tgtaactttt aataaagata
1261 gccagaatat tctaaattag aaattacgtt tttgtttccc tcaagacata aaacaaatat
1321 aaacattcta aactgctgga tgaatctgaa aagacattaa gttcaaattt taatttattc
1381 tcatattaaa tataactcca ttaaaagttt aaaatttcat gggagaaaat ataataaggt
1441 aaagaggtag aatcactttc agacttaaga ataatgttga tttcccaagt gctttacctt
1501 atctgttaaa gcgtaagatg aattggtatt tgcttcatag gcagtttgac tgcatgtatt
1561 agagaatgaa aagaagatat ttgtagtaat gcctggaaac ttggtgcttt aaattaaggt
1621 actcctctgc tgctgtagaa tggattccac acagtggata gctatgggtg attcagagta
1681 ttatgtttag attcccattt gttaagttta taagttttgt ggggaattat gaacttactg
1741 tgtactacct gcatttgtgc tgtgtgaaaa ataaatacaa ggattcgttt agctaattca
1801 actaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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