LOCUS BC005882 2697 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vacuolar protein sorting 37 homolog B (S. cerevisiae),
mRNA (cDNA clone MGC:4691 IMAGE:3533384), complete cds.
ACCESSION BC005882
VERSION BC005882.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2697)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2697)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC005882.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: h Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375925.
FEATURES Location/Qualifiers
source 1..2697
/db_xref="H-InvDB:HIT000032495"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4691 IMAGE:3533384"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2697
/gene="VPS37B"
/gene_synonym="FLJ12750"
/db_xref="GeneID:79720"
/db_xref="HGNC:HGNC:25754"
/db_xref="MIM:610037"
CDS 42..899
/gene="VPS37B"
/gene_synonym="FLJ12750"
/codon_start=1
/product="vacuolar protein sorting 37 homolog B (S.
cerevisiae)"
/protein_id="AAH05882.1"
/db_xref="GeneID:79720"
/db_xref="HGNC:HGNC:25754"
/db_xref="MIM:610037"
/translation="MAGAGSEARFAGLSLVQLNELLEDEGQLTEMVQKMEETQNVQLN
KEMTLASNRSLAEGNLLYQPQLDTLKARLTQKYQELQVLFEAYQIKKTKLDRQSSSAS
LETLLALLQAEGAKIEEDTENMAEKFLDGELPLDSFIDVYQSKRKLAHMRRVKIEKLQ
EMVLKGQRLPQALAPLPPRLPELAPTAPLPYPAPEASGPPAVAPRRIPPPPPPVPAGR
LATPFTAAMSSGQAVPYPGLQCPPLPPRVGLPTQQGFSSQFVSPYPPPLPQRPPPRLP
PHQPGFILQ"
BASE COUNT 538 a 803 c 771 g 585 t
ORIGIN
1 gtggccgcag cggcggtggc gacgacggcc gagacgtggg gatggcgggc gccgggagcg
61 aagcccggtt cgccgggctg tcgctggtgc agctcaacga gctgctggag gacgagggcc
121 agctgacgga gatggtgcag aagatggagg agacacagaa tgttcagctt aacaaagaaa
181 tgacacttgc cagcaaccgg agcctggcag aaggaaacct tttgtaccag ccccagctgg
241 acacgttgaa agcacgcttg acccagaaat accaggaact ccaggttctc tttgaagcct
301 atcagataaa gaagaccaaa ttagacagac agtctagcag tgcttccttg gagaccctgt
361 tagcacttct tcaggcagaa ggggccaaga ttgaggaaga cactgagaac atggcagaga
421 agtttctgga tggagaactt cctctggatt ccttcattga tgtctatcag agcaaacgga
481 aactggccca catgcgacgg gtgaaaatcg agaagctcca ggagatggtc ctaaaggggc
541 agagactccc acaggccctg gccccgctgc cccccaggct gcccgaactg gcacctaccg
601 ccccccttcc ctaccctgcc ccagaggcca gtgggcctcc tgccgttgca cctcggcgca
661 tccccccccc accacccccg gtgcctgcgg gacgcttagc caccccgttt actgcggcca
721 tgagttcggg acaggccgtg ccgtacccag gattacagtg cccgcccctg cccccccgcg
781 tgggcctccc cactcagcaa ggattctctt cgcagttcgt gtccccatat ccgccacctc
841 tccctcagag acccccgccc cggctccctc cacaccagcc gggtttcatc ctccagtgag
901 cgccggcgcg gtccttcccg ggagacttct tccacctggc gtgttgtgct ctgctcacgg
961 gaaggaggct ggaggtccgc tctgtgccaa gggctctggg gccctgggcc agcgtgtctg
1021 tctgatttta gaactgtagg tcagtggtga gtagtaggag cccaggcttt gggcatcaag
1081 gcagttgtgt gtgccgggtt acagcctgac acctgtgcgt tgcatcggtt tgcattatcc
1141 gtgtgatttc taagtatctt agcgttgatg aactcatgtt tgggaagaaa taggcctctc
1201 ccccagtccc atttagaatc gtggtccttc tgttgcagct ttatttaatg agcatggttc
1261 atgatactta ttttattttc gaaagacagt cctatgtgtc tcacccaccg gccactgcag
1321 ccctggtgag ggcgggtggg cgccggccgg cctggaagag cgccgtggct gggccaccac
1381 ctgtggctgc gttgttgctc actgaatctg ttggggagag gtcaccatag tcaccgcctg
1441 acctggctgc tgctcttgct tcagagccac aagcaaagtt tgcactgggc ccactgccga
1501 gtccagaggc cggagaacgg ccactggtgt gggaggggag cgcacgagtg ggactttgca
1561 cagcaaattg tgtccccagc tcctcctctc ccgcctgcct ggagccggcc ctgaaggttt
1621 ctatgaagaa ataatccccc aatattttta ctacgtgtgt gattttcctg ttttatattg
1681 aaaaaacttt tttgacactc ccaagaccat tcagggaaat tttataaaaa atgcagatac
1741 tgtcttgagc agatcgaaat gccgatgaag tggatgcaat ttccttttgt gcaagcagtg
1801 cacggtgccc ccccctcggg tgtccgtgct gtgccttagc ttccccaggt gccgggactc
1861 acacctgcta ggggctgggc aaggccccgg ctctgctttc tctgaagggc ttgtccaagt
1921 tcattgccct gttacaggtg gtcaagacgt ccggccgcct tgacccaggc tacccttagc
1981 caatatcctc tgcccctggg tggctggtgg ctgggcctca gggtgggcaa cgttaggggt
2041 ttggcgaaag cccgccccat gggattgagg gacggggctg cactccaacc gtctgcacct
2101 gctcttcccc cacccctgtg ggacctcatc ttcacgtgcc atgtgtgctg aaggcccagg
2161 gcccagcagg gggcagtggc acctgttgac ggaaaaggcc gaggtgctta ccagtggacc
2221 ttctggcccg cccctcccct gtcacttgtc gggcatccag ggccccgacc tgtgcctagc
2281 cgccagggtg acagaaggca gaactgaagc ggggtctggg ccacgggcca ggccactgcc
2341 ttttgtcctc agtgaccata cattcctgct ctcggacttg aactctactg taactgtttt
2401 cttgaaatga agctgtacag gacgattcac tgccatgcca gtcaggcggg cttgccatgt
2461 tctgtgaatc tcgagtgagc ggtgccaccc gcccccatac ctccgccacc ggccgctgtc
2521 ggggatgcca cagcctgcca cggtcgcagc cagacgtgag cttggcattg aagttgcaaa
2581 gcggcccctg gccgggctcg ccgtcgctgt ccagggccgt gtccggtgct gtggctgtaa
2641 agctgtagga ccctttttaa taaatagaga attattaata aaaaaaaaaa aaaaaaa
//