LOCUS BC005807 1314 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens stearoyl-CoA desaturase (delta-9-desaturase), mRNA
(cDNA clone IMAGE:3844850), complete cds.
ACCESSION BC005807
VERSION BC005807.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1314)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1314)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC005807.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 53759150
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1314
/db_xref="H-InvDB:HIT000032450"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3844850"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1314
/gene="SCD"
/gene_synonym="FADS5"
/gene_synonym="MSTP008"
/gene_synonym="SCD1"
/db_xref="GeneID:6319"
/db_xref="HGNC:HGNC:10571"
/db_xref="MIM:604031"
CDS 178..1245
/gene="SCD"
/gene_synonym="FADS5"
/gene_synonym="MSTP008"
/gene_synonym="SCD1"
/codon_start=1
/product="SCD protein"
/protein_id="AAH05807.1"
/db_xref="GeneID:6319"
/db_xref="HGNC:HGNC:10571"
/db_xref="MIM:604031"
/translation="MPAHLLQDDISSSYTTTTTITAPPSRVLQNGGDKLETMPLYLED
DIRPDIKDDIYDPTYKDKEGPSPKVEYVWRNIILMSLLHLGALYGITLIPTCKFYTWL
WGVFYYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAH
HKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYY
KPGLLMMCFILPTLVPWYFWGETFQNSVFVATFLRYAVVLNATWLVNSAAHLFGYRPY
DKNISPRENILVSLGAVGEGFHNYHHSFPYDYSASEYRWHINFTTFFIDCMAALGLAY
DRKKVSKAAILARIKRTGDGN"
BASE COUNT 352 a 365 c 302 g 295 t
ORIGIN
1 aattcccggc tcggggacct ccacgcaccg cggctagcgc cgacaaccag ctagcgtgca
61 aggcgccgcg gctcagcgcg taccggcggg cttcgaaacc gcagtcctcc ggcgaccccg
121 aactccgctc cggagcctca gccccctgga aagtgatccc ggcatccgag agccaagatg
181 ccggcccact tgctgcagga cgatatctct agctcctata ccaccaccac caccattaca
241 gcgcctccct ccagggtcct gcagaatgga ggagataagt tggagacgat gcccctctac
301 ttggaagacg acattcgccc tgatataaaa gatgatatat atgaccccac ctacaaggat
361 aaggaaggcc caagccccaa ggttgaatat gtctggagaa acatcatcct tatgtctctg
421 ctacacttgg gagccctgta tgggatcact ttgattccta cctgcaagtt ctacacctgg
481 ctttgggggg tattctacta ttttgtcagt gccctgggca taacagcagg agctcatcgt
541 ctgtggagcc accgctctta caaagctcgg ctgcccctac ggctctttct gatcattgcc
601 aacacaatgg cattccagaa tgatgtctat gaatgggctc gtgaccaccg tgcccaccac
661 aagttttcag aaacacatgc tgatcctcat aattcccgac gtggcttttt cttctctcac
721 gtgggttggc tgcttgtgcg caaacaccca gctgtcaaag agaaggggag tacgctagac
781 ttgtctgacc tagaagctga gaaactggtg atgttccaga ggaggtacta caaacctggc
841 ttgctgatga tgtgcttcat cctgcccacg cttgtgccct ggtatttctg gggtgaaact
901 tttcaaaaca gtgtgttcgt tgccactttc ttgcgatatg ctgtggtgct taatgccacc
961 tggctggtga acagtgctgc ccacctcttc ggatatcgtc cttatgacaa gaacattagc
1021 ccccgggaga atatcctggt ttcacttgga gctgtgggtg agggcttcca caactaccac
1081 cactcctttc cctatgacta ctctgccagt gagtaccgct ggcacatcaa cttcaccaca
1141 ttcttcattg attgcatggc cgccctcggt ctggcctatg accggaagaa agtctccaag
1201 gccgccatct tggccaggat taaaagaacc ggagatggaa actaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaataaaa aaaaaaaaaa aaaa
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