LOCUS BC005408 3509 bp mRNA linear HUM 03-FEB-2004
DEFINITION Homo sapiens leucine-rich repeat kinase 1, mRNA (cDNA clone
IMAGE:3463078), partial cds.
ACCESSION BC005408
VERSION BC005408.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3509)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3509)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 4 Row: n Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3509
/db_xref="H-InvDB:HIT000032446"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3463078"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..3509
/gene="LRRK1"
/gene_synonym="FLJ23119"
/gene_synonym="KIAA1790"
/db_xref="GeneID:79705"
CDS <1..1982
/gene="LRRK1"
/gene_synonym="FLJ23119"
/gene_synonym="KIAA1790"
/codon_start=3
/product="LRRK1 protein"
/protein_id="AAH05408.2"
/db_xref="GeneID:79705"
/translation="ISIHPLCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAY
QIASGLAYLHKKNIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEG
TPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPVL
GQPEEVQFRRLQALMMECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQTAFFS
SQGQEYTVVFWDGKEESRNYTVVNTEKGLMEVQRMCCPGMKVSCQLQVQRSLWTATED
QKIYIYTLKGMCPLNTPQQALDTPAVVTCFLAVPVIKKNSYLVLAGLADGLVAVFPVV
RGTPKDSCSYLCSHTANRSKFSIADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVI
DCASLEICRRLEPYMAPSMVTSVVCSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCAR
YFCGVPSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEELGTQILIHQ
ESLTDYCSMSSYSSSPPRQAARSPSSLPSSPASSSSVPFSTDCEDSDMLHMPGAASDR
SEHDLTPMDGETFSQHLQAVKILAVRDLIWVPRRGGDVIVIGLEKDSEAQRGRVIAVL
KARELTPHGIMPVSSVKVCWAGWPVRDMVYMAAVM"
misc_feature 15..581
/gene="LRRK1"
/gene_synonym="FLJ23119"
/gene_synonym="KIAA1790"
/note="Pkinase; Region: Protein kinase domain"
/db_xref="CDD:pfam00069"
BASE COUNT 810 a 994 c 953 g 752 t
ORIGIN
1 gcatcagcat ccacccgctc tgcttcgccc tggagctcgc gccgctcagc agcctcaaca
61 ccgtgctgtc cgagaacgcc agagattctt cctttatacc cctgggacac atgctcaccc
121 aaaaaatagc ctaccagatc gcctcgggcc tggcctacct gcacaagaaa aacatcatct
181 tctgtgacct gaagtcggac aacattctgg tgtggtccct tgacgtcaag gagcacatca
241 acatcaagct atctgactac gggatttcga ggcagtcatt ccatgagggc gccctaggcg
301 tggagggcac tcctggctac caggccccag agatcaggcc tcgcattgta tatgatgaga
361 aggtagatat gttctcctat ggaatggtgc tctacgagtt gctgtcagga cagcgccctg
421 cactgggcca ccaccagctc cagattgcca agaagctgtc caagggcatc cgcccggttc
481 tggggcagcc ggaggaagtg cagttccggc gactgcaggc gctcatgatg gagtgctggg
541 acactaagcc agagaagcga ccgctggccc tgtcggtggt gagccagatg aaggacccga
601 cttttgccac cttcatgtat gaactgtgct gtgggaagca gacagccttc ttctcatccc
661 agggccagga gtacaccgtg gtgttttggg atggaaaaga ggagtccagg aactacacgg
721 tggtgaacac agagaagggc ctcatggagg tgcagaggat gtgctgccct gggatgaagg
781 tgagctgcca gctccaggtc cagagatccc tgtggacagc caccgaggac cagaaaatct
841 acatctacac cctcaagggc atgtgcccct taaacacacc ccaacaggcc ttggatactc
901 cagctgtcgt cacctgcttc ttggccgtgc ctgttattaa aaagaattcc tacctggtct
961 tagcgggcct cgccgatggg cttgtggctg tgtttcccgt ggtgcggggc accccaaagg
1021 acagctgctc ctacctgtgc tcacacacag ccaacaggtc caagttcagc atcgcggatg
1081 aagacgcacg gcagaacccc tacccagtga aggccatgga ggtggtcaac agcggctctg
1141 aggtctggta cagcaatggg ccgggcctcc ttgtcatcga ctgtgcctcc ctggagatct
1201 gcaggcggct ggagccctac atggccccct ccatggttac gtcagtcgtg tgcagctctg
1261 agggcagagg ggaggaggtc gtctggtgcc tggatgacaa ggccaactcc ttggtgatgt
1321 accactccac cacctaccag ctgtgtgccc ggtacttctg cggggtcccc agccccctca
1381 gggacatgtt tcccgtgcgg cccttggaca cggaaccccc ggcagccagc cacacggcca
1441 acccaaaggt gcctgagggg gactccatcg cggacgtgag catcatgtac agtgaggagc
1501 tgggcacgca gatcctgatc caccaggaat cactcactga ctactgctcc atgtcctcct
1561 actcctcatc cccaccccgc caggctgcca ggtccccctc aagcctcccc agctccccag
1621 caagttcttc cagtgtgcct ttctccaccg actgcgagga ctcagacatg ctacatatgc
1681 ccggtgctgc ctccgacagg tctgagcatg acctgacccc catggacggg gagaccttca
1741 gccagcacct gcaggccgtg aagatcctcg ccgtcagaga cctcatttgg gtccccaggc
1801 gcggtggaga tgttatcgtc attggcctgg agaaggattc tgaagcccag cggggccgag
1861 tcattgccgt cttaaaagcc cgagagctga ctccgcatgg gattatgcca gtctcctctg
1921 tgaaggtatg ctgggcaggg tggcctgtcc gggacatggt ctacatggct gcagtgatgt
1981 gaggctggcg ccagctgcag ctccccacag tgtttacacc ccgcactttg actaccgagc
2041 cccacacggg tgctggtgga tgctgccgtg gtggcaaagg acactgttgt gtgcaccttt
2101 gaaaatgaaa acacagagtg gtgcctggcc gtctggaggg gctggggcgc cagggagttc
2161 gacattttct accagtccta cgaggagctg ggccggctgg aggcttgcac tcgcaagaga
2221 aggtaattcc tgtggaatga ctgtcacaca tcagagctgg ctggcccggg gctgcagcct
2281 gacccctctg ccatcggcct ctagttctcc aaggacctag aagacagatg gagttctccc
2341 ctgaactcct tgctgctaag aagtgctgag aagttactcg cctggcggtg gctccagggt
2401 tctctggttc tctggagcag agttctctga ataccccatc ccccaactgc tgattttaca
2461 gccccaggga agacagtggt atcaggctgg gagcggcctc ctctggcctc ccccatcagt
2521 ttgcaggagc aggggtgcag gatcctgttc tgagctgggt caaacaaagc agggccgggc
2581 cttcctgcca tccccaggtc tcagatggaa ttacactaga ggccctccgc tgggaagcac
2641 ttgaggtagg gcaggagggg ggctgtgacc cctgcccttt ccccgccaga gacctcaggc
2701 tctcagcaca ttccacaggc tcctgagtcc ccgaggcctg ggccagcttg ggcaagccaa
2761 gatcagatgt ctctgtgttc gggaaggtct ccgtgtggga aagcccttgg gggatcccgg
2821 gtgaggagtg ttgccccatc cagagaatga atgagttcct ttaagtgcca ccgccagcaa
2881 gcccagaggc acacagtccg agtgcacccg cttagccttt acattcctct ccaccgacaa
2941 aaggaagggg aaactcaatc agcaggactt cagaaagggc cttgtgttta tagctttgtc
3001 aagtaaattt ggacgcagct ggagcacagg ccctgtttgt ttgcacataa taatcttgtt
3061 tatcacttta aaaaattcag taatatctca gcagtcaggc ttctggttgt gaaatcacat
3121 tgtatgggat ttataccaaa ttatgtattt gctaaacatt cactgcacac gtgtacagcg
3181 gagtacgaaa aggaacgttg tccacagggg atttatggat acaacagcaa acattttata
3241 aactatgcac atgcattaca cacatgcaca cacatatgca cacacatgtg caaacatagc
3301 cacttttttg tcaagagtta ccctttgggg ctccttaaac cagaatggga gtttgaaaga
3361 gagatcatac tccagctgaa gtttgttgac ccttttctaa aattaaaaag atcaaattta
3421 gtatttgctg gatatgcagg gagatgagac tcttttaatc tcaaaataaa cagattcttt
3481 caaaaaaaaa aaaaaaaaaa aaaaaaaaa
//