LOCUS BC005174 1380 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens activating transcription factor 5, mRNA (cDNA clone
MGC:842 IMAGE:3504701), complete cds.
ACCESSION BC005174
VERSION BC005174.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1380)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1380)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC005174.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: k Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12597624.
FEATURES Location/Qualifiers
source 1..1380
/db_xref="H-InvDB:HIT000032264"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:842 IMAGE:3504701"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1380
/gene="ATF5"
/gene_synonym="ATFX"
/gene_synonym="HMFN0395"
/db_xref="GeneID:22809"
/db_xref="HGNC:HGNC:790"
/db_xref="MIM:606398"
CDS 307..1155
/gene="ATF5"
/gene_synonym="ATFX"
/gene_synonym="HMFN0395"
/codon_start=1
/product="activating transcription factor 5"
/protein_id="AAH05174.1"
/db_xref="GeneID:22809"
/db_xref="HGNC:HGNC:790"
/db_xref="MIM:606398"
/translation="MSLLATLGLELDRALLPASGLGWLVDYGKLPPAPAPLAPYEVLG
GALEGGLPVGGEPLAGDGFSDWMTERVDFTALLPLEPPLPPGTLPQPSPTPPDLEAMA
SLLKKELEQMEDFFLDAPLLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQPPVLDTLD
LLAIYCRNEAGQEEVGMPPLPPPQQPPPPSPPQPSRLAPYPHPATTRGDRKQKKRDQN
KSAALRYRQRKRAEGEALEGECQGLEARNRELKERAESVEREIQYVKDLLIEVYKARS
QRTRSC"
BASE COUNT 242 a 511 c 364 g 263 t
ORIGIN
1 cctcggatca cagtctcttc tcactacagt gtcgccgcct ctgcctgcgt agccccggcc
61 atggctctgt agcctcgacc cctttgtgcc cccggcccgt ctccgcgctc accacgcctg
121 cgctctccgc tcccaccttc tttcttcagc cgaggccgcc gccgcctctc cttgctgcag
181 ccatggagtc ttccactttc gccttggtgc ctgtcttcgc ccacctgagc atcctccaga
241 gcctcgtgcc agctgctggt gcagcctctc ctgttgccat cagtgcccag cacctgtgct
301 acagccatgt cactcctggc gaccctgggg ctggagctgg acagggccct gctcccagct
361 agtgggctgg gatggctcgt agactatggg aaactccccc cggcccctgc ccccctggct
421 ccctatgagg tccttggggg agccctggag ggcgggcttc cagtgggggg agagcccctg
481 gcaggtgatg gcttctctga ctggatgact gagcgagttg atttcacagc tctcctccct
541 ctggagcctc ccctaccccc cggcaccctc ccccaacctt ccccaacccc acctgacctg
601 gaagctatgg cctccctcct caagaaggag ctggaacaga tggaagactt cttcctagat
661 gccccgctcc tcccaccacc ctccccgccg ccactaccac caccaccact accaccagcc
721 ccctccctcc ccctgtccct cccctccttt gacctccccc agccccctgt cttggatact
781 ctggacttgc tggccatcta ctgccgcaac gaggccgggc aggaggaagt ggggatgccg
841 cctctgcccc cgccacagca gccccctcct ccttctccac ctcaaccttc tcgcctggcc
901 ccctacccac atcctgccac cacccgaggg gaccgcaagc aaaagaagag agaccagaac
961 aagtcggcgg ctctgaggta ccgccagcgg aagcgggcag agggtgaggc cctggagggc
1021 gagtgccagg ggctggaggc acggaatcgc gagctgaagg aacgggcaga gtccgtggag
1081 cgcgagatcc agtacgtcaa ggacctgctc atcgaggttt acaaggcccg gagccagagg
1141 acccgtagct gctagaaggg caggggtgtg gcttctgggg gctggtcttc agctctggcg
1201 ccttcatccc cctgcctcta ccttcattcc aaacccctct cggccgggtg cagtggctta
1261 tgcttgtaat cccagcactt tgggaggcca aggcaggagg atcgtttgag gccaggaggt
1321 caataccagc ctgggcaaca tagtaagacc ctgtctctat taaaaaaaaa aaaaaaaaaa
//