LOCUS BC005048 1123 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens haloacid dehalogenase-like hydrolase domain containing
3, mRNA (cDNA clone MGC:12904 IMAGE:3615096), complete cds.
ACCESSION BC005048
VERSION BC005048.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1123)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1123)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC005048.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: g Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377665.
FEATURES Location/Qualifiers
source 1..1123
/db_xref="H-InvDB:HIT000032182"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12904 IMAGE:3615096"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1123
/gene="HDHD3"
/gene_synonym="2810435D12Rik"
/gene_synonym="MGC12904"
/db_xref="GeneID:81932"
/db_xref="HGNC:HGNC:28171"
CDS 176..931
/gene="HDHD3"
/gene_synonym="2810435D12Rik"
/gene_synonym="MGC12904"
/codon_start=1
/product="haloacid dehalogenase-like hydrolase domain
containing 3"
/protein_id="AAH05048.1"
/db_xref="GeneID:81932"
/db_xref="HGNC:HGNC:28171"
/translation="MAHRLQIRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSA
LEQGFRQAYRAQSHSFPNYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLY
KDFSHPCTWQVLDGAEDTLRECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTS
EAAGWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALD
PVVRDSVPKEHILPSLAHLLPALDCLEGSTPGL"
BASE COUNT 228 a 343 c 322 g 230 t
ORIGIN
1 gatcttgtgc tgtgaagaca tttcccaagt gcttcatgtt agccagcaaa tctgacccac
61 aaggcctgga aagaggtgat tgttaggttg cgcagaggtg gtcttatcca gctcagcttc
121 ccctgggacc caccgtggga cctgaggcag aactggggtg gacttggcct cctccatggc
181 acaccggctg cagatacgac tgctgacgtg ggatgtgaag gacacgctgc tcaggctccg
241 ccacccctta ggggaggcct atgccaccaa ggcccgggcc catgggctgg aggtggagcc
301 ctcagccctg gaacaaggct tcaggcaggc atacagggct cagagccaca gcttccccaa
361 ctacggcctg agccacggcc taacctcccg ccagtggtgg ctggatgtgg tcctgcagac
421 cttccacctg gcgggtgtcc aggatgctca ggctgtagcc cccatcgctg aacagcttta
481 taaagacttc agccacccct gcacctggca ggtgttggat ggggctgagg acaccctgag
541 ggagtgccgc acacggggtc tgagactggc agtgatctcc aactttgacc gacggctaga
601 gggcatcctg gggggccttg gcctgcgtga acacttcgac tttgtgctga cctccgaggc
661 tgctggctgg cccaagccgg acccccgcat tttccaggag gccttgcggc ttgctcatat
721 ggaaccagta gtggcagccc atgttgggga taattacctc tgcgattacc aggggcctcg
781 ggctgtgggc atgcacagct tcctggtggt tggcccacag gcactggacc ccgtggtcag
841 ggattctgta cctaaagaac acatcctccc ctctctggcc catctcctgc ctgcccttga
901 ctgcctagag ggctcaactc cagggctttg aggccagtga gggaagtggc tgggccctag
961 gccatggaga aaaccttaaa caaaccctgg agacagggag ccccttcttt ctccacagct
1021 ctggaccttt ccccctctcc ctgcggcctt tgtcacctac tgtgataata aagcagtgag
1081 tgctgagctc tcacccttcc cccactaaaa aaaaaaaaaa aaa
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