LOCUS BC005038 2651 bp mRNA linear HUM 24-JAN-2005
DEFINITION Homo sapiens chromodomain helicase DNA binding protein 1-like, mRNA
(cDNA clone IMAGE:3618220), partial cds.
ACCESSION BC005038
VERSION BC005038.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2651)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2651)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: g Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42734376.
FEATURES Location/Qualifiers
source 1..2651
/db_xref="H-InvDB:HIT000258907"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3618220"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2651
/gene="CHD1L"
/gene_synonym="CHDL"
/gene_synonym="FLJ22530"
/db_xref="GeneID:9557"
CDS <1..2372
/gene="CHD1L"
/gene_synonym="CHDL"
/gene_synonym="FLJ22530"
/codon_start=3
/product="CHD1L protein"
/protein_id="AAH05038.1"
/db_xref="GeneID:9557"
/translation="GFLLRLHTEGRAEAARVQEQDLRQWGLTGIHLRSYQLEGVNWLA
QRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQR
FAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVD
EAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLFSKEEVGD
FIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYY
KAILMKDLDAFENETAKKVKLQNILSQLRKCVDHPYLFDGGVGMNLTAADTVIFVDSD
FNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFT
LGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEIDLESILGETKDGQWVSDALPAA
EGGSRDQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLQKTLLEKASQEGRSLRNK
GSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKRQKEEAEHKKKM
AWWESNNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVSGDVTHPQAGAE
DALIVHCVDDSGHWGRGGLFTALEKRSAEPRKIYELAGKMKDLSLGGVLLFPVDDKES
RNKGQDLLALIVAQHRDRSNVLSGIKMAALEEGLKKIFLAAKKKKASVHLPRIGHATK
GFNWYGTERLIRKHLAARGIPTYIYYFPRSKSAVLHSQSSSSSSRQLVP"
BASE COUNT 777 a 548 c 667 g 659 t
ORIGIN
1 ctggcttctt actgcggctt catactgagg gccgagccga ggcggcgcgg gtgcaggagc
61 aggacttacg gcagtggggg ctgacaggga ttcacctacg ctcttaccag ctggagggag
121 taaactggct cgcccagcgc ttccattgtc agaatggctg tatcctggga gatgagatgg
181 gcctggggaa gacctgccag actattgctc tcttcattta tttggcagga agattaaatg
241 atgaagggcc atttctgatt ctttgtccct tgtctgtttt gagcaactgg aaagaagaaa
301 tgcagagatt tgctccaggt ctttcctgtg taacatatgc aggcgacaag gaggaaagag
361 cctgccttca gcaagacctg aaacaggagt cacgttttca tgtgctactg actacctatg
421 agatttgctt gaaagatgca tcatttctaa aatcattccc ttggagtgtt cttgttgtgg
481 atgaagctca caggttgaaa aaccaaagct ccctgctgca taagaccttg tcagagttct
541 cagtagtttt cagtctcctg ttgaccggaa ctcccatcca gaacagcctc caagagctct
601 actccctcct cagttttgtg gagcctgatc tcttttccaa ggaagaggtg ggagatttta
661 ttcaacgcta ccaggatatt gagaaagaat ctgagtcagc aagtgaactg cacaaactct
721 tgcagccatt tctgctgagg cgagtgaaag ctgaggtagc tacagagctt cccaagaaga
781 cagaagtagt gatataccat ggcatgtcag cattgcagaa gaaatactac aaggccattt
841 tgatgaaaga cctagatgca tttgaaaatg agacggcaaa gaaagttaaa ctacagaaca
901 ttttgtccca gcttcgaaag tgtgtggatc acccatattt gtttgatggt ggagttggca
961 tgaacttaac agcagcagat actgtgattt ttgttgacag tgactttaat cctcagaatg
1021 acttgcaagc agctgccagg gctcatcgca ttggccaaaa caagtctgtt aaagttattc
1081 ggctgattgg tcgagacact gtggaagaaa tagtctatag gaaagcagcc tccaaactgc
1141 agctcaccaa catgatcata gaaggaggcc attttactct gggagcccag aaacccgctg
1201 ccgatgctga cctccagttg agtgagatac tcaaatttgg tttggataaa ctgctggcct
1261 ctgaggggag caccatggat gaaatagacc tggagtccat cctgggagaa acaaaagatg
1321 gccagtgggt ctctgatgcc ttgcctgcag cagaaggagg gagcagagat caagaggaag
1381 gaaaaaatca tatgtactta tttgaaggta aagattattc taaagagccc agtaaggaag
1441 acagaaaatc atttgaacaa ctggtaaacc ttcagaaaac ccttttggag aaagctagtc
1501 aagagggccg atcactccga aataaaggca gtgttctcat cccaggcctt gtggagggat
1561 ctaccaaaag gaagcgggtt ctgagtccag aagagctgga ggacagacag aagaaaagac
1621 aagaagcagc tgccaagaga aggagactca tagaggagaa gaagaggcaa aaggaagagg
1681 ctgaacataa gaaaaagatg gcctggtggg aatccaacaa ttaccagtcc ttctgcctgc
1741 cctctgagga gagcgagcca gaggaccttg agaatgggga agagagctct gctgagctgg
1801 attaccaaga cccagatgct acttccctca agtacgttag tggtgatgtc acccaccctc
1861 aggctggggc cgaggatgct ctcattgtgc actgcgtaga tgactctggc cactggggca
1921 gaggtggttt atttacagct ctggaaaagc gatccgctga gccaagaaaa atatatgagc
1981 tggctgggaa aatgaaagac ctgagtttgg gaggtgtcct tttatttcct gttgatgata
2041 aagaatcaag aaacaaaggg caagatttgt tggccttgat tgtggctcag catcgtgatc
2101 gttccaatgt cctgtctggc attaagatgg cagccctaga agagggcctg aagaagatat
2161 ttttagcagc aaaaaagaag aaagcaagtg ttcatcttcc acgtattgga catgccacga
2221 aaggttttaa ctggtatggt actgagcgac ttattcggaa acatctggct gcaagaggca
2281 tcccaactta catatattat tttcctagaa gcaagtctgc tgtccttcat tcacagtctt
2341 catcttcctc ctcaagacag ctggtgcctt aagaattggc ccagcctcag atcctgtctt
2401 tagcaaccag ctaatattta cccagaggta ctgcaataga gtatttcaaa atggaatcag
2461 gatctggtgg gcctcagaaa ttgtctcttt tctgagtttc aatttggttc tcctggatgt
2521 tttgctctgt tttggtacct gtaatatagg gaaacacaac tttttttggg aaagcccttt
2581 gaccccagct tgctagttgc ataataataa attttctgtt cctaaaaaaa aaaaaaaaaa
2641 aaaaaaaaaa a
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