LOCUS BC005033 3504 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens actinin, alpha 4, mRNA (cDNA clone MGC:12692
IMAGE:3842046), complete cds.
ACCESSION BC005033
VERSION BC005033.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3504)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3504)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 18 Row: k Column: 19.
FEATURES Location/Qualifiers
source 1..3504
/db_xref="H-InvDB:HIT000032172"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:12692 IMAGE:3842046"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3504
/gene="ACTN4"
/gene_synonym="FSGS"
/gene_synonym="FSGS1"
/db_xref="GeneID:81"
/db_xref="HGNC:HGNC:166"
/db_xref="MIM:604638"
CDS 14..2749
/gene="ACTN4"
/gene_synonym="FSGS"
/gene_synonym="FSGS1"
/codon_start=1
/product="actinin, alpha 4"
/protein_id="AAH05033.1"
/db_xref="GeneID:81"
/db_xref="HGNC:HGNC:166"
/db_xref="MIM:604638"
/translation="MVDYHAANQSYQYGPSSAGNGAGGGGSMGDYMAQEDDWDRDLLL
DPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLEVISGERLPKPERG
KMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQDISV
EETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPELIEYDKLRKD
DPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSFYHAFSGAQKAET
AANRICKVLAVNQENEHLMEDYEKLASDLLEWIRRTIPWLEDRVPQKTIQEMQQKLED
FRDYRRVHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNGWQHLEQ
AEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTDGKEAMLKHRDYETATLSDIK
ALIRKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSHNVNTRCQKICDQWDALGSL
THSRREALEKTEKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGL
ISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWE
KVQQLVPKRDHALLEEQSKQQSNEHLRRQFASQANVVGPWIQTKMEEIGRISIEMNGT
LEDQLSHLKQYERSIVDYKPNLDLLEQQHQLIQEALIFDNKHTNYTMEHIRVGWEQLL
TTIARTINEVENQILTRDAKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLG
YDVENDRQGEAEFNRIMSLVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLA
GDKNFITAEELRRELPPDQAEYCIARMAPYQGPDAVPGALDYKSFSTALYGESDL"
BASE COUNT 880 a 1076 c 1001 g 547 t
ORIGIN
1 gagaggcggc ggaatggtgg actaccacgc ggcgaaccag tcgtaccagt acggccccag
61 cagcgcgggc aatggcgctg gcggcggggg cagcatgggc gactacatgg cccaggagga
121 cgactgggac cgggacctgc tgctggaccc ggcctgggag aagcagcagc gcaagacctt
181 cacggcatgg tgcaactccc acctgcggaa ggcaggcaca cagatcgaga acattgatga
241 ggacttccga gacgggctca agctcatgct gctcctggag gtcatatcag gggagcggtt
301 acctaagccg gagcggggga agatgagagt gcacaaaatc aacaatgtga acaaagcgct
361 ggactttatt gccagcaaag gcgtcaagct ggtctccatc ggggcagaag agattgtgga
421 cggcaacgca aagatgaccc tgggaatgat ctggaccatc atccttaggt tcgccatcca
481 ggacatctcc gtggaagaga cctcggccaa ggaagggctc cttctctggt gccagagaaa
541 gacagccccg tataagaacg tcaatgtgca gaacttccac atcagctgga aggatggtct
601 tgccttcaat gccctgatcc accggcacag accagagctg attgagtatg acaagctgag
661 gaaggacgac cctgtcacca acctgaacaa tgccttcgaa gtggctgaga aatacctcga
721 catccccaag atgctggatg cagaggacat cgtgaacacg gcccggcccg acgagaaggc
781 cataatgacc tatgtgtcca gcttctacca tgccttttca ggagcgcaga aggctgaaac
841 tgccgccaac cggatctgta aggtgctggc tgtcaaccaa gagaacgagc acctgatgga
901 ggactacgag aagctggcca gcgacctcct ggagtggatc cggcgcacca tcccctggct
961 ggaggaccgt gtgccccaaa agactatcca ggagatgcag cagaagctgg aggacttccg
1021 cgactaccgg cgtgtgcaca agccgcccaa ggtgcaggag aagtgccagc tggagatcaa
1081 cttcaacacg ctgcagacca agctgcgcct cagcaaccgg cccgccttca tgccctccga
1141 gggcaagatg gtctcggaca tcaacaatgg ctggcagcac ttggagcagg ctgagaaggg
1201 ctacgaggag tggctgctga atgagatccg caggctggag cggctcgacc acctggcaga
1261 gaagttccgg cagaaggcct ccatccacga ggcctggact gacgggaagg aagccatgct
1321 gaagcaccgg gactacgaga cggccacact atcggacatc aaagccctca ttcgcaagca
1381 cgaggccttc gagagcgacc tggctgcgca ccaggaccgc gtggagcaga tcgccgccat
1441 tgcccaggag ctcaacgagc tggattacta cgactcccac aatgtcaaca cccggtgcca
1501 gaagatctgt gaccagtggg acgccctcgg ctctctgaca catagtcgca gggaagccct
1561 ggagaaaaca gagaagcagc tggaggccat cgaccagctg cacctggaat acgccaagcg
1621 cgcggccccc ttcaacaact ggatggagag cgccatggag gacctccagg acatgttcat
1681 cgtccatacc atcgaggaga ttgagggcct gatctcagcc catgaccagt tcaagtccac
1741 cctgccggac gccgataggg agcgcgaggc catcctggcc atccacaagg aggcccagag
1801 gatcgctgag agcaaccaca tcaagctgtc gggcagcaac ccctacacca ccgtcacccc
1861 gcaaatcatc aactccaagt gggagaaggt gcagcagctg gtgccaaaac gggaccatgc
1921 cctcctggag gagcagagca agcagcagtc caacgagcac ctgcgccgcc agttcgccag
1981 ccaggccaat gttgtggggc cctggatcca gaccaagatg gaggagatcg ggcgcatctc
2041 cattgagatg aacgggaccc tggaggacca gctgagccac ctgaagcagt atgaacgcag
2101 catcgtggac tacaagccca acctggacct gctggagcag cagcaccagc tcatccagga
2161 ggccctcatc ttcgacaaca agcacaccaa ctataccatg gagcacatcc gcgtgggctg
2221 ggagcagctg ctcaccacca ttgcccgcac catcaacgag gtggagaacc agatcctcac
2281 ccgcgacgcc aagggcatca gccaggagca gatgcaggag ttccgggcgt ccttcaacca
2341 cttcgacaag gatcatggcg gggcgctggg gcccgaggag ttcaaggcct gcctcatcag
2401 cctgggctac gacgtggaga acgaccggca gggtgaggcc gagttcaacc gcatcatgag
2461 cctggtcgac cccaaccata gcggccttgt gaccttccaa gccttcatcg acttcatgtc
2521 gcgggagacc accgacacgg acacggctga ccaggtcatc gcttccttca aggtcttagc
2581 aggggacaag aacttcatca cagctgagga gctgcggaga gagctgcccc ccgaccaggc
2641 cgagtactgc atcgcccgca tggcgccata ccagggccct gacgccgtgc ccggtgccct
2701 cgactacaag tccttctcca cggccttgta tggcgagagc gacctgtgag gccccagaga
2761 cctgacccaa cacccccgac ggcctccagg aggggcctgg gcagccccac agtcccattc
2821 ctccactctg tatctatgca aagcactctc tgcagtcctc cggggtgggt gggtgggcag
2881 ggaggggctg gggcaggctc tctcctctct ctctttgtgg gttggccagg aggttccccc
2941 gaccaggttg gggagacttg gggccagcgc ttctggtctg gtaaatatgt atgatgtgtt
3001 gtgctttttt aaccaaggag gggccagtgg attcccacag cacaaccggt cccttccatg
3061 ccctgggatg cctcaccaca cccaggtctc ttcctttgct ctgaggtccc ttcaaggcct
3121 ccccaatcca ggccaaagcc ccatgtgcct tgtccaggaa ctgcctgggc catgcgaggg
3181 gccagcagag ggcgccacca ccacctgacg gctggggacc cacccagccc ctctcccctc
3241 tctgctccag actcacttgc cattgccagg agatggcccc aacaagcacc ccgcttttgc
3301 agcagaggag ctgagttggc agaccgggcc cccctgaacc gcaccccatc ccaccagccc
3361 cggccttgct ttgtctggcc tcacgtgtct cagattttct aagaaccaaa aaaaaaaaag
3421 gaaaaaaaac acaaaacaac aaaaaccaaa aaaaaaaaaa atcacaaaaa aaaaaaaaaa
3481 aaaaaaaaaa aaaaaaaaaa aaac
//