LOCUS BC004983 1566 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, alpha, mRNA (cDNA clone MGC:3942
IMAGE:2957970), complete cds.
ACCESSION BC004983
VERSION BC004983.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1566)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1566)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: n Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10092618.
FEATURES Location/Qualifiers
source 1..1566
/db_xref="H-InvDB:HIT000032132"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3942 IMAGE:2957970"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1566
/gene="NFKBIA"
/gene_synonym="IKBA"
/gene_synonym="MAD-3"
/db_xref="GeneID:4792"
/db_xref="HGNC:HGNC:7797"
/db_xref="MIM:164008"
CDS 94..1047
/gene="NFKBIA"
/gene_synonym="IKBA"
/gene_synonym="MAD-3"
/codon_start=1
/product="nuclear factor of kappa light polypeptide gene
enhancer in B-cells inhibitor, alpha"
/protein_id="AAH04983.1"
/db_xref="GeneID:4792"
/db_xref="HGNC:HGNC:7797"
/db_xref="MIM:164008"
/translation="MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQ
MVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA
FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV
GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR
TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN
LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL"
BASE COUNT 398 a 404 c 415 g 349 t
ORIGIN
1 gccgccgtcc cgcccgccag cgccccagcg aggaagcagc gcgcagcccg cggcccagcg
61 cacccgcagc agcgcccgca gctcgtccgc gccatgttcc aggcggccga gcgcccccag
121 gagtgggcca tggagggccc ccgcgacggg ctgaagaagg agcggctact ggacgaccgc
181 cacgacagcg gcctggactc catgaaagac gaggagtacg agcagatggt caaggagctg
241 caggagatcc gcctcgagcc gcaggaggtg ccgcgcggct cggagccctg gaagcagcag
301 ctcaccgagg acggggactc gttcctgcac ttggccatca tccatgaaga aaaggcactg
361 accatggaag tgatccgcca ggtgaaggga gacctggctt tcctcaactt ccagaacaac
421 ctgcagcaga ctccactcca cttggctgtg atcaccaacc agccagaaat tgctgaggca
481 cttctgggag ctggctgtga tcctgagctc cgagactttc gaggaaatac ccccctacac
541 cttgcctgtg agcagggctg cctggccagc gtgggagtcc tgactcagtc ctgcaccacc
601 ccgcacctcc actccatcct gaaggctacc aactacaatg gccacacgtg tctacactta
661 gcctctatcc atggctacct gggcatcgtg gagcttttgg tgtccttggg tgctgatgtc
721 aatgctcagg agccctgtaa tggccggact gcccttcacc tcgcagtgga cctgcaaaat
781 cctgacctgg tgtcactcct gttgaagtgt ggggctgatg tcaacagagt tacctaccag
841 ggctattctc cctaccagct cacctggggc cgcccaagca cccggataca gcagcagctg
901 ggccagctga cactagaaaa ccttcagatg ctgccagaga gtgaggatga ggagagctat
961 gacacagagt cagagttcac ggagttcaca gaggacgagc tgccctatga tgactgtgtg
1021 tttggaggcc agcgtctgac gttatgagcg caaaggggct gaaagaacat ggacttgtat
1081 atttgtacaa aaaaaaagtt ttatttttct aaaaaaagaa aaaagaagaa aaaatttaaa
1141 gggtgtactt atatccacac tgcacactgc ctggcccaaa acgtcttatt gtggtaggat
1201 cagccctcat tttgttgctt ttgtgaactt tttgtagggg acgagaaaga tcattgaaat
1261 tctgagaaaa cttcttttaa acctcacctt tgtggggttt ttggagaagg ttatcaaaaa
1321 tttcatggaa ggaccacatt ttatatttat tgtgcttcga gtgactgacc ccagtggtat
1381 cctgtgacat gtaacagcca ggagtgttaa gcgttcagtg atgtggggtg aaaagttact
1441 acctgtcaag gtttgtgtta ccctcctgta aatggtgtac ataatgtatt gttggtaatt
1501 attttggtac ttttatgatg tatatttatt aaacagattt ttacaaaaaa aaaaaaaaaa
1561 aaaaaa
//