LOCUS BC004972 2710 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transforming growth factor, beta-induced, 68kDa, mRNA
(cDNA clone MGC:3646 IMAGE:2958878), complete cds.
ACCESSION BC004972
VERSION BC004972.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2710)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2710)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507466.
FEATURES Location/Qualifiers
source 1..2710
/db_xref="H-InvDB:HIT000032122"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3646 IMAGE:2958878"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2710
/gene="TGFBI"
/gene_synonym="BIGH3"
/gene_synonym="CDB1"
/gene_synonym="CDG2"
/gene_synonym="CDGG1"
/gene_synonym="CSD"
/db_xref="GeneID:7045"
/db_xref="HGNC:HGNC:11771"
/db_xref="MIM:601692"
CDS 50..2101
/gene="TGFBI"
/gene_synonym="BIGH3"
/gene_synonym="CDB1"
/gene_synonym="CDG2"
/gene_synonym="CDGG1"
/gene_synonym="CSD"
/codon_start=1
/product="transforming growth factor, beta-induced, 68kDa"
/protein_id="AAH04972.1"
/db_xref="GeneID:7045"
/db_xref="HGNC:HGNC:11771"
/db_xref="MIM:601692"
/translation="MALFVRLLALALALALGPAATLAGPAKSPYQLVLQHSRLRGRQH
GPNVCAVQKVIGTNRKYFTNCKQWYQRKICGKSTVISYECCPGYEKVPGEKGCPAALP
LSNLYETLGVVGSTTTQLYTDRTEKLRPEMEGPGSFTIFAPSNEAWASLPAEVLDSLV
SNVNIELLNALRYHMVGRRVLTDELKHGMTLTSMYQNSNIQIHHYPNGIVTVNCARLL
KADHHATNGVVHLIDKVISTITNNIQQIIEIEDTFETLRAAVAASGLNTMLEGNGQYT
LLAPTNEAFEKIPSETLNRILGDPEALRDLLNNHILKSAMCAEAIVAGLSVETLEGTT
LEVGCSGDMLTINGKAIISNKDILATNGVIHYIDELLIPDSAKTLFELAAESDVSTAI
DLFRQAGLGNHLSGSERLTLLAPLNSVFKDGTPPIDAHTRNLLRNHIIKDQLASKYLY
HGQTLETLGGKKLRVFVYRNSLCIENSCIAAHDKRGRYGTLFTMDRVLTPPMGTVMDV
LKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELA
NILKYHIGDEILVSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNGV
VHVITNVLQPPANRPQERGDELADSALEIFKQASAFSRASQRSVRLAPVYQKLLERMK
H"
BASE COUNT 695 a 731 c 698 g 586 t
ORIGIN
1 ccgcttgccc gtcggtcgct agctcgctcg gtgcgcgtcg tcccgctcca tggcgctctt
61 cgtgcggctg ctggctctcg ccctggctct ggccctgggc cccgccgcga ccctggcggg
121 tcccgccaag tcgccctacc agctggtgct gcagcacagc aggctccggg gccgccagca
181 cggccccaac gtgtgtgctg tgcagaaggt tattggcact aataggaagt acttcaccaa
241 ctgcaagcag tggtaccaaa ggaaaatctg tggcaaatca acagtcatca gctacgagtg
301 ctgtcctgga tatgaaaagg tccctgggga gaagggctgt ccagcagccc taccactctc
361 aaacctttac gagaccctgg gagtcgttgg atccaccacc actcagctgt acacggaccg
421 cacggagaag ctgaggcctg agatggaggg gcccggcagc ttcaccatct tcgcccctag
481 caacgaggcc tgggcctcct tgccagctga agtgctggac tccctggtca gcaatgtcaa
541 cattgagctg ctcaatgccc tccgctacca tatggtgggc aggcgagtcc tgactgatga
601 gctgaaacac ggcatgaccc tcacctctat gtaccagaat tccaacatcc agatccacca
661 ctatcctaat gggattgtaa ctgtgaactg tgcccggctg ctgaaagccg accaccatgc
721 aaccaacggg gtggtgcacc tcatcgataa ggtcatctcc accatcacca acaacatcca
781 gcagatcatt gagatcgagg acacctttga gacccttcgg gctgctgtgg ctgcatcagg
841 gctcaacacg atgcttgaag gcaacggcca gtacacgctt ttggccccga ccaatgaggc
901 cttcgagaag atccctagtg agactttgaa ccgtatcctg ggcgacccag aagccctgag
961 agacctgctg aacaaccaca tcttgaagtc agctatgtgt gctgaagcca tcgttgcggg
1021 gctgtctgtg gagaccctgg agggcacgac actggaggtg ggctgcagcg gggacatgct
1081 cactatcaac gggaaggcga tcatctccaa taaagacatc ctagccacca acggggtgat
1141 ccactacatt gatgagctac tcatcccaga ctcagccaag acactatttg aattggctgc
1201 agagtctgat gtgtccacag ccattgacct tttcagacaa gccggcctcg gcaatcatct
1261 ctctggaagt gagcggttga ccctcctggc tcccctgaat tctgtattca aagatggaac
1321 ccctccaatt gatgcccata caaggaattt gcttcggaac cacataatta aagaccagct
1381 ggcctctaag tatctgtacc atggacagac cctggaaact ctgggcggca aaaaactgag
1441 agtttttgtt tatcgtaata gcctttgcat tgagaacagc tgcatcgcgg cccacgacaa
1501 gagggggagg tacgggaccc tgttcacgat ggaccgggtg ctgacccccc caatggggac
1561 tgtcatggat gtcctgaagg gagacaatcg ctttagcatg ctggtagctg ccatccagtc
1621 tgcaggactg acggagaccc tcaaccggga aggagtctac acagtcttcg ctcccacaaa
1681 tgaagccttc cgagccctgc caccaagaga acggagcaga ctcttgggag atgccaagga
1741 acttgccaac atcctgaaat accacattgg tgatgaaatc ctggttagcg gaggcatcgg
1801 ggccctggtg cggctaaagt ctctccaagg tgacaagctg gaagtcagct tgaaaaacaa
1861 tgtggtgagt gtcaacaagg agcctgttgc cgagcctgac atcatggcca caaatggcgt
1921 ggtccatgtc atcaccaatg ttctgcagcc tccagccaac agacctcagg aaagagggga
1981 tgaacttgca gactctgcgc ttgagatctt caaacaagca tcagcgtttt ccagggcttc
2041 ccagaggtct gtgcgactag cccctgtcta tcaaaagtta ttagagagga tgaagcatta
2101 gcttgaagca ctacaggagg aatgcaccac ggcagctctc cgccaatttc tctcagattt
2161 ccacagagac tgtttgaatg ttttcaaaac caagtatcac actttaatgt acatgggccg
2221 caccataatg agatgtgagc cttgtgcatg tgggggagga gggagagaga tgtacttttt
2281 aaatcatgtt ccccctaaac atggctgtta acccactgca tgcagaaact tggatgtcac
2341 tgcctgacat tcacttccag agaggaccta tcccaaatgt ggaattgact gcctatgcca
2401 agtccctgga aaaggagctt cagtattgtg gggctcataa aacatgaatc aagcaatcca
2461 gcctcatggg aagtcctggc acagtttttg taaagccctt gcacagctgg agaaatggca
2521 tcattataag ctatgagttg aaatgttctg tcaaatgtgt ctcacatcta cacgtggctt
2581 ggaggctttt atggggccct gtccaggtag aaaagaaatg gtatgtagag cttagatgtc
2641 cctattgtga cagagccatg gtgtgtttgt aataataaaa ccaaagaaac ataaaaaaaa
2701 aaaaaaaaaa
//