LOCUS BC004924 1873 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens high mobility group AT-hook 1, mRNA (cDNA clone
MGC:4854 IMAGE:3605116), complete cds.
ACCESSION BC004924
VERSION BC004924.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1873)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1873)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004924.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22208972.
FEATURES Location/Qualifiers
source 1..1873
/db_xref="H-InvDB:HIT000032087"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4854 IMAGE:3605116"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1873
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
CDS 203..493
/gene="HMGA1"
/gene_synonym="HMG-R"
/gene_synonym="MGC12816"
/gene_synonym="MGC4242"
/gene_synonym="MGC4854"
/codon_start=1
/product="high mobility group AT-hook 1"
/protein_id="AAH04924.1"
/db_xref="GeneID:3159"
/db_xref="HGNC:HGNC:5010"
/db_xref="MIM:600701"
/translation="MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPK
RPRGRPKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ"
BASE COUNT 388 a 644 c 489 g 352 t
ORIGIN
1 ccgagccggg gctatttctg gcgctggcgc ggctccaaga aggcatccgc atttgctacc
61 agcggcggcc gcggcggagc caggccggtc ctcagcgccc agcaccgccg ctcccggcaa
121 cccggagcgc gcaccgcagg ccggcggccg agctcgcgca tcccagccat cactcttcca
181 cctgctcctt agagaaggga agatgagtga gtcgagctcg aagtccagcc agcccttggc
241 ctccaagcag gaaaaggacg gcactgagaa gcggggccgg ggcaggccgc gcaagcagcc
301 tccgaaggag cccagcgaag tgccaacacc taagagacct cggggccgac caaagggaag
361 caaaaacaag ggtgctgcca agacccggaa aaccaccaca actccaggaa ggaaaccaag
421 gggcagaccc aaaaaactgg agaaggagga agaggagggc atctcgcagg agtcctcgga
481 ggaggagcag tgacccatgc gtgccgcctg ctcctcactg gaggagcagc ttccttctgg
541 gactggacag ctttgctccg ctcccaccgc ccccgcccct tccccaggcc caccatcacc
601 accgcctctg gccgccaccc ccatcttcca cctgtgccct caccaccaca ctacacagca
661 caccagccgc tgcagggctc ccatgggctg agtggggagc agttttcccc tggcctcagt
721 tcccagctcc ccccgcccac ccacgcatac acacatgccc tcctggacaa ggctaacatc
781 ccacttagcc gcaccctgca cctgctgcgt ccccactccc ttggtggtgg ggacattgct
841 ctctgggctt ttggtttggg ggcgccctct ctgctccttc actgttccct ctggcttccc
901 atagtggggc ctgggagggt tcccctggcc ttaaaagggg cccaagcccc atctcatcct
961 ggcacgccct actccactgc cctggcagca gcaggtgtgg ccaatggagg ggggtgctgg
1021 cccccaggat tcccccagcc aaactgtctt tgtcaccacg tggggctcac ttttcatcct
1081 tccccaactt ccctagtccc cgtactaggt tggacagccc ccttcggcta caggaaggca
1141 ggaggggtga gtcccctact ccctcttcac tgtggccaca gcccccttgc cctccgcctg
1201 ggatctgagt acatattgtg gtgatggaga tgcagtcact tattgtccag gtgaggccca
1261 agagccctgt ggccgccacc tgaggtgggc tggggctgct cccctaaccc tactttgctt
1321 ccgccactca gccatttccc cctcctcaga tggggcacca ataacaagga gctcaccctg
1381 cccgctccca acccccctcc tgctcctccc tgccccccaa ggttctggtt ccatttttcc
1441 tctgttcaca aactacctct ggacagttgt gttgtttttt gttcaatgtt ccattcttcg
1501 acatccgtca ttgctgctgc taccagcgcc aaatgttcat cctcattgcc tcctgttctg
1561 cccacgatcc cctcccccaa gatactcttt gtggggaaga ggggctgggg catggcaggc
1621 tgggtgaccg actaccccag tcccagggaa ggtggggccc tgcccctagg atgctgcagc
1681 agagtgagca agggggcccg aatcgaccat aaagggtgta ggggccacct cctccccctg
1741 ttctgttggg gaggggtagc catgatttgt cccagcctgg ggctccctct ctggtttcct
1801 atttgcagtt acttgaataa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1861 aaaaaaaaaa aaa
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