LOCUS BC004485 966 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens PPPDE peptidase domain containing 1, mRNA (cDNA clone
MGC:10665 IMAGE:3831754), complete cds.
ACCESSION BC004485
VERSION BC004485.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 966)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 966)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004485.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: b Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38708308.
FEATURES Location/Qualifiers
source 1..966
/db_xref="H-InvDB:HIT000031982"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10665 IMAGE:3831754"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..966
/gene="PPPDE1"
/gene_synonym="CGI-146"
/gene_synonym="PNAS-4"
/db_xref="GeneID:51029"
/db_xref="HGNC:HGNC:24264"
CDS 214..798
/gene="PPPDE1"
/gene_synonym="CGI-146"
/gene_synonym="PNAS-4"
/codon_start=1
/product="PPPDE peptidase domain containing 1"
/protein_id="AAH04485.1"
/db_xref="GeneID:51029"
/db_xref="HGNC:HGNC:24264"
/translation="MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGG
HPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYH
LMHKNCNHFSSALSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVS
QELQDELEEAEDAAASASVASTAAGSRPGRHTKL"
BASE COUNT 257 a 239 c 248 g 222 t
ORIGIN
1 gccaacggtc cggccccgtc cgcacagacg ctcctgtcgg cggcgcccgg gagcggctcg
61 gctgcccgat gcttccgccc cggctgccgc gggccgggct gtacgcttag tgcccggctc
121 aggccccctg aagcgcccgc gggggtgaga gcggcctccg gccccgcgga gacggagcgg
181 cttgaggacg aggcggcggc cgcggggagg aggatggggg ctaaccagtt agtggtgctc
241 aacgtgtacg acatgtattg gatgaacgaa tatacctcat ccattggaat tggagttttt
301 cattcaggaa ttgaagtcta tggcagagaa tttgcttatg gtggccatcc ttaccccttt
361 tctggaatat ttgaaatttc cccaggaaat gcttctgaac taggagaaac atttaaattt
421 aaagaagctg ttgttttagg gagcacggac ttcctagaag atgatataga aaaaattgta
481 gaagaactgg gaaaagaata caaaggcaat gcttatcatt taatgcataa aaactgcaat
541 catttttctt cagctttatc agagattctt tgtgggaaag agattcctcg ctggatcaat
601 cgacttgcct acttcagctc ctgtataccc tttctacaga gttgcctccc gaaggagtgg
661 ctcacgcccg cagccctgca gtctagtgtc agccaagaac tccaggatga actggaggaa
721 gcagaggatg ctgccgcatc cgcttccgtg gcaagcactg cagcaggctc cagacccggg
781 cgccacacta aactataaat gtctccaaag tcacacattc agaactgtct ctggcagtcg
841 aatatcacta gagaaaagta aacagagaag catcctttag atattttgta tgcaaagatg
901 gctctccccc aaatcccagt ttttcagctc aggattatat ttgtaatcaa aaaaaaaaaa
961 aaaaaa
//