LOCUS BC004395 2053 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens apolipoprotein L, 2, mRNA (cDNA clone MGC:10978
IMAGE:3636011), complete cds.
ACCESSION BC004395
VERSION BC004395.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2053)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2053)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: h Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22035654.
FEATURES Location/Qualifiers
source 1..2053
/db_xref="H-InvDB:HIT000031913"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10978 IMAGE:3636011"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2053
/gene="APOL2"
/gene_synonym="APOL-II"
/db_xref="GeneID:23780"
/db_xref="HGNC:HGNC:619"
/db_xref="MIM:607252"
CDS 205..1218
/gene="APOL2"
/gene_synonym="APOL-II"
/codon_start=1
/product="apolipoprotein L, 2"
/protein_id="AAH04395.1"
/db_xref="GeneID:23780"
/db_xref="HGNC:HGNC:619"
/db_xref="MIM:607252"
/translation="MNPESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAEL
PRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRAL
AEEVEQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAA
VAGITCSVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQ
GIGRNIRAIRRARANPQLGAYAPPPHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVG
AATGGILLLLDVVSLAYESKHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEMLQPG
QDQ"
BASE COUNT 580 a 468 c 587 g 418 t
ORIGIN
1 gctggacgtg ggatccacac agctcagaac agttggatct tgctcagtct ctgtcagagg
61 aagatccctt ggacaagagg accctgcctt ggtgtgagag tgagggtaga ggaagctgga
121 acgagggtta aggaaaacct tccagtctgg acagtgactg gagagctcca aggaaagccc
181 ctcggtaacc cagccgctgg caccatgaac ccagagagca gtatctttat tgaggattac
241 cttaagtatt tccaggacca agtgagcaga gagaatctgc tacaactgct gactgatgat
301 gaagcctgga atggattcgt ggctgctgct gaactgccca gggatgaggc agatgagctc
361 cgtaaagctc tgaacaagct tgcaagtcac atggtcatga aggacaaaaa ccgccacgat
421 aaagaccagc agcacaggca gtggtttttg aaagagtttc ctcggttgaa aagggagctt
481 gaggatcaca taaggaagct ccgtgccctt gcagaggagg ttgagcaggt ccacagaggc
541 accaccattg ccaatgtggt gtccaactct gttggcacta cctctggcat cctgaccctc
601 ctcggcctgg gtctggcacc cttcacagaa ggaatcagtt ttgtgctctt ggacactggc
661 atgggtctgg gagcagcagc tgctgtggct gggattacct gcagtgtggt agaactagta
721 aacaaattgc gggcacgagc ccaagcccgc aacttggacc aaagcggcac caatgtagca
781 aaggtgatga aggagtttgt gggtgggaac acacccaatg ttcttacctt agttgacaat
841 tggtaccaag tcacacaagg gattgggagg aacatccgtg ccatcagacg agccagagcc
901 aaccctcagt taggagcgta tgccccaccc ccgcatgtca ttgggcgaat ctcagctgaa
961 ggcggtgaac aggttgagag ggttgttgaa ggccccgccc aggcaatgag cagaggaacc
1021 atgatcgtgg gtgcagccac tggaggcatc ttgcttctgc tggatgtggt cagccttgca
1081 tatgagtcaa agcacttgct tgagggggca aagtcagagt cagctgagga gctgaagaag
1141 cgggctcagg agctggaggg gaagctcaac tttctcacca agatccatga gatgctgcag
1201 ccaggccaag accaatgacc ccagagcagt gcagccacca gggcagaaat gccgggcaca
1261 ggccaggaca aaatgcagac tttttttttt tttttttttt tttttgagat ggagtctcgc
1321 tctatcgccc aggatggagt gcagtggctc aatctcggct cactgcaaac tccgcctccc
1381 gggttcacac cattctccgg cctcagtctc ccgagtagct gggactacag gcacctgcca
1441 ccacgcccgg ctaatttttt tgtattttca ctggagacgg ggtttcactg tgttagccac
1501 gatggtctcc atctcctgac ctcgtgatct gcccacctcg gcctcccaaa gtgctgggat
1561 tacaggcgtg agccaccgcg cctggccaaa atgcagacat tttattaggg ggataaggag
1621 ggcaaggtaa agcttatgga actgagtgtt agtgactttg gcatttgtgt agctgagcac
1681 agcaagggag gggttaatgc agatggcaag tgcaccaagg agaaggcagg aacactggag
1741 cctgcaataa gggaggagag aggactggag agtgtgggga atgggaagaa gtagtttact
1801 ttggactaaa gaatatattg ggcgaagaat agagggggag cttgcaggaa ccagcaatga
1861 gaaggccagg aaaagaaaga gctgaaaatg gagaaaacca gagttagaac tgttggatac
1921 aggagaagaa acagcagctc cactaccgac ccccccccag gtttgatgtc cttccaagaa
1981 taaagtcttt ccctggtgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2041 aaaaaaaaaa aaa
//