LOCUS BC004372 2387 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CD44 molecule (Indian blood group), mRNA (cDNA clone
MGC:10468 IMAGE:3638681), complete cds.
ACCESSION BC004372
VERSION BC004372.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2387)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2387)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255942.
FEATURES Location/Qualifiers
source 1..2387
/db_xref="H-InvDB:HIT000031897"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10468 IMAGE:3638681"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2387
/gene="CD44"
/gene_synonym="CDW44"
/gene_synonym="ECMR-III"
/gene_synonym="HCELL"
/gene_synonym="IN"
/gene_synonym="LHR"
/gene_synonym="MC56"
/gene_synonym="MGC10468"
/gene_synonym="MUTCH-I"
/gene_synonym="Pgp1"
/db_xref="GeneID:960"
/db_xref="HGNC:HGNC:1681"
/db_xref="MIM:107269"
CDS 132..2231
/gene="CD44"
/gene_synonym="CDW44"
/gene_synonym="ECMR-III"
/gene_synonym="HCELL"
/gene_synonym="IN"
/gene_synonym="LHR"
/gene_synonym="MC56"
/gene_synonym="MGC10468"
/gene_synonym="MUTCH-I"
/gene_synonym="Pgp1"
/codon_start=1
/product="CD44 molecule (Indian blood group)"
/protein_id="AAH04372.1"
/db_xref="GeneID:960"
/db_xref="HGNC:HGNC:1681"
/db_xref="MIM:107269"
/translation="MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSI
SRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNT
GVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGE
YRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDR
IPATSTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTK
QNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEE
TPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSH
PMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVE
DLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSE
GSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTF
HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVC
IAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFM
TADETRNLQNVDMKIGV"
BASE COUNT 716 a 640 c 537 g 494 t
ORIGIN
1 cctcgtgccg cggaccccag cctctgccag gttcggtccg ccatcctcgt cccgtcctcc
61 gccggcccct gccccgcgcc cagggatcct ccagctcctt tcgcccgcgc cctccgttcg
121 ctccggacac catggacaag ttttggtggc acgcagcctg gggactctgc ctcgtgccgc
181 tgagcctggc gcagatcgat ttgaatataa cctgccgctt tgcaggtgta ttccacgtgg
241 agaaaaatgg tcgctacagc atctctcgga cggaggccgc tgacctctgc aaggctttca
301 atagcacctt gcccacaatg gcccagatgg agaaagctct gagcatcgga tttgagacct
361 gcaggtatgg gttcatagaa gggcatgtgg tgattccccg gatccacccc aactccatct
421 gtgcagcaaa caacacaggg gtgtacatcc tcacatccaa cacctcccag tatgacacat
481 attgcttcaa tgcttcagct ccacctgaag aagattgtac atcagtcaca gacctgccca
541 atgcctttga tggaccaatt accataacta ttgttaaccg tgatggcacc cgctatgtcc
601 agaaaggaga atacagaacg aatcctgaag acatctaccc cagcaaccct actgatgatg
661 acgtgagcag cggctcctcc agtgaaagga gcagcacttc aggaggttac atcttttaca
721 ccttttctac tgtacacccc atcccagacg aagacagtcc ctggatcacc gacagcacag
781 acagaatccc tgctaccagt acgtcttcaa ataccatctc agcaggctgg gagccaaatg
841 aagaaaatga agatgaaaga gacagacacc tcagtttttc tggatcaggc attgatgatg
901 atgaagattt tatctccagc accatttcaa ccacaccacg ggcttttgac cacacaaaac
961 agaaccagga ctggacccag tggaacccaa gccattcaaa tccggaagtg ctacttcaga
1021 caaccacaag gatgactgat gtagacagaa atggcaccac tgcttatgaa ggaaactgga
1081 acccagaagc acaccctccc ctcattcacc atgagcatca tgaggaagaa gagaccccac
1141 attctacaag cacaatccag gcaactccta gtagtacaac ggaagaaaca gctacccaga
1201 aggaacagtg gtttggcaac agatggcatg agggatatcg ccaaacaccc agagaagact
1261 cccattcgac aacagggaca gctgcagcct cagctcatac cagccatcca atgcaaggaa
1321 ggacaacacc aagcccagag gacagttcct ggactgattt cttcaaccca atctcacacc
1381 ccatgggacg aggtcatcaa gcaggaagaa ggatggatat ggactccagt catagtacaa
1441 cgcttcagcc tactgcaaat ccaaacacag gtttggtgga agatttggac aggacaggac
1501 ctctttcaat gacaacgcag cagagtaatt ctcagagctt ctctacatca catgaaggct
1561 tggaagaaga taaagaccat ccaacaactt ctactctgac atcaagcaat aggaatgatg
1621 tcacaggtgg aagaagagac ccaaatcatt ctgaaggctc aactacttta ctggaaggtt
1681 atacctctca ttacccacac acgaaggaaa gcaggacctt catcccagtg acctcagcta
1741 agactgggtc ctttggagtt actgcagtta ctgttggaga ttccaactct aatgtcaatc
1801 gttccttatc aggagaccaa gacacattcc accccagtgg ggggtcccat accactcatg
1861 gatctgaatc agatggacac tcacatggga gtcaagaagg tggagcaaac acaacctctg
1921 gtcctataag gacaccccaa attccagaat ggctgatcat cttggcatcc ctcttggcct
1981 tggctttgat tcttgcagtt tgcattgcag tcaacagtcg aagaaggtgt gggcagaaga
2041 aaaagctagt gatcaacagt ggcaatggag ctgtggagga cagaaagcca agtggactca
2101 acggagaggc cagcaagtct caggaaatgg tgcatttggt gaacaaggag tcgtcagaaa
2161 ctccagacca gtttatgaca gctgatgaga caaggaacct gcagaatgtg gacatgaaga
2221 ttggggtgta acacctacac cattatcttg gaaagaaaca accgttggaa acataaccat
2281 tacagggagc tgggacactt aacagatgca atgtgctact gattgtttca ttgcgaatct
2341 tttttagcat aaaattttct actcttaaaa aaaaaaaaaa aaaaaaa
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