LOCUS BC004314 1625 bp mRNA linear HUM 13-OCT-2005
DEFINITION Homo sapiens sorbin and SH3 domain containing 3, mRNA (cDNA clone
IMAGE:3628014), partial cds.
ACCESSION BC004314
VERSION BC004314.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1625)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1625)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: m Column: 10.
FEATURES Location/Qualifiers
source 1..1625
/db_xref="H-InvDB:HIT000086333"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3628014"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1625
/gene="SORBS3"
/gene_synonym="SCAM-1"
/gene_synonym="SH3D4"
/gene_synonym="vinexin"
/db_xref="GeneID:10174"
/db_xref="HGNC:HGNC:30907"
/db_xref="IMGT/GENE-DB:30907"
/db_xref="MIM:30907"
CDS <1..808
/gene="SORBS3"
/gene_synonym="SCAM-1"
/gene_synonym="SH3D4"
/gene_synonym="vinexin"
/codon_start=2
/product="SORBS3 protein"
/protein_id="AAH04314.1"
/db_xref="GeneID:10174"
/db_xref="HGNC:HGNC:30907"
/db_xref="IMGT/GENE-DB:30907"
/db_xref="MIM:30907"
/translation="GDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPADEIPKPIK
PPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIF
PASYVQVSREPRLRLCDDGPQLPTSPRLTAAARSARHPSSPSALRSPADPTDLGGQTS
PRRTGFSFPTQEPRPQTQNLGTPGPALSHSRGPSHPLDLGTSSPNTSQIHWTPYRAMY
QYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV"
BASE COUNT 345 a 572 c 428 g 280 t
ORIGIN
1 gggtgacatt gtctacatcc acaaggaggt ggacaagaac tggctggagg gagagcacca
61 cggccgcctg ggcatcttcc ctgctaatta tgtggaggtg ctgcccgcag atgagatccc
121 taagcccatc aagcccccga cctaccaggt gctggagtat ggagaggctg tggcccagta
181 caccttcaag ggggacctgg aggtggagct gtccttccgc aagggagagc acatctgcct
241 gatccgcaag gtgaacgaga actggtacga gggacgcatc acgggcacgg ggcgccaagg
301 catattccct gccagctacg tgcaggtgtc tcgtgaaccc cggctccggc tctgtgacga
361 cggcccccag ctccccacgt ctccccgcct gaccgctgcc gcccgctcag cccgtcaccc
421 cagctccccc tcagccctgc gcagcccagc tgaccccacc gacttggggg gacagacctc
481 cccccgtcgc actggcttct ccttccccac ccaggagcct agaccccaga cccagaatct
541 tggcacccct ggtccagctc tgtcccactc tcgaggtccc agccatcccc tggacctggg
601 gacctcctct cctaacacct ctcagataca ctggaccccg taccgggcga tgtaccagta
661 caggccccag aacgaagacg agctggagct gcgcgagggg gacagggtgg atgtcatgca
721 gcagtgtgac gatggctggt ttgtgggtgt ctcccggagg acccagaaat tcggaacgtt
781 ccctggaaat tacgttgccc cggtgtgagt ggtctccatg gcaacttgga gccagccagg
841 atggggtggg gagcggtggc actcgtggga gggagaggac ccccgcccac atcctccttc
901 cccaggacct gagctcccag catctgcaga cgacccccgc agcctttccc tcggaccccc
961 ctcgaagccc cctggactga ttcccaccca cgactcacag gcattcctcc cacagccctt
1021 tcatttcctc cccaccccac tccccaaata cagaggtctg ctttgaagcg gagaccattt
1081 ccaggcctta ttgagaccag accccaagtc ccccaccccc atcctgctcc agcgtttcct
1141 ctaacaggga ccagctctcc gctttgcccc cacggggttc ctctaaccag aaccagcttc
1201 ctagcctcgt agagaccaaa ggccgccccc gcctgctggg gttcctccca gcaccccagc
1261 ttgctggctg ccctctttgc cttctggcct ccagctgggt gtgggggggc ggagcaaggc
1321 gggggacaga cgcagcacct tcttagcgat ctaggcctgg caagagctct ggccccaagg
1381 cctcctcttc ccaggggctg ccaagtcctg gccctggccc tggcatatca ccccgcactg
1441 tggggccagg caccactagc ctggctcaaa tattccccag ggagactgct gtgtgctgcc
1501 cgcctgcctg ctggctctcc cccagcccca catcccctct ggaagagaat gtaaaataaa
1561 cctggacaca agggaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaa
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