LOCUS BC004264 3138 bp mRNA linear HUM 01-NOV-2004
DEFINITION Homo sapiens EPH receptor B4, mRNA (cDNA clone IMAGE:3611312),
partial cds.
ACCESSION BC004264
VERSION BC004264.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3138)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3138)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: m Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..3138
/db_xref="H-InvDB:HIT000086314"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3611312"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3138
/gene="EPHB4"
/gene_synonym="HTK"
/gene_synonym="MYK1"
/gene_synonym="TYRO11"
/db_xref="GeneID:2050"
/db_xref="MIM:600011"
CDS <1..2540
/gene="EPHB4"
/gene_synonym="HTK"
/gene_synonym="MYK1"
/gene_synonym="TYRO11"
/codon_start=3
/product="EPHB4 protein"
/protein_id="AAH04264.1"
/db_xref="GeneID:2050"
/db_xref="MIM:600011"
/translation="AEHLTRKRPGAEATGKVNVKTLRLGPLSKAGFYLAFQDQGACMA
LLSLHLFYKKCAQLTVNLTRFPETVPRELVVPVAGSCVVDAVPAPGPSPSLYCREDGQ
WAEQPVTGCSCAPGFEAAEGNTKCRACAQGTFKPLSGEGSCQPCPANSHSNTIGSAVC
QCRVGYFRARTDPRGAPCTTPPSAPRSVVSRLNGSSLHLEWSAPLESGGREDLTYALR
CRECRPGGSCAPCGGDLTFDPGPRDLVEPWVVVRGLRPDFTYTFEVTALNGVSSLATG
PVPFEPVNVTTDREVPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGA
EGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDESEGW
REQLALIAGTAVVGVVLVLVVIVVAVLCLRKQSNGREAEYSDKHGQYLIGHGTKVYID
PFTYEDPNEAVREFAKEIDVSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLK
GGYTERQRREFLSEASIMGQFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLRLN
DGQFTVIQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLE
ENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGERPYWDM
SNQDVINAIEQDYRLPPPPDCPTSLHQLMLDCWQKDRNARPRFPQVVSALDKMIRNPA
SLKIVARENGGASHPLLDQRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVS
QISAEDLLRIGVTLAGHQKKILASVQHMKSQAKPGTPGGTGGPAPQY"
BASE COUNT 667 a 946 c 947 g 578 t
ORIGIN
1 ccgcggagca tctcacccgg aagcgccctg gggccgaggc caccgggaag gtgaatgtca
61 agacgctgcg tctgggaccg ctcagcaagg ctggcttcta cctggccttc caggaccagg
121 gtgcctgcat ggccctgcta tccctgcacc tcttctacaa aaagtgcgcc cagctgactg
181 tgaacctgac tcgattcccg gagactgtgc ctcgggagct ggttgtgccc gtggccggta
241 gctgcgtggt ggatgccgtc cccgcccctg gccccagccc cagcctctac tgccgtgagg
301 atggccagtg ggccgaacag ccggtcacgg gctgcagctg tgctccgggg ttcgaggcag
361 ctgaggggaa caccaagtgc cgagcctgtg cccagggcac cttcaagccc ctgtcaggag
421 aagggtcctg ccagccatgc ccagccaata gccactctaa caccattgga tcagccgtct
481 gccagtgccg cgtcgggtac ttccgggcac gcacagaccc ccggggtgca ccctgcacca
541 cccctccttc ggctccgcgg agcgtggttt cccgcctgaa cggctcctcc ctgcacctgg
601 aatggagtgc ccccctggag tctggtggcc gagaggacct cacctacgcc ctccgctgcc
661 gggagtgccg acccggaggc tcctgtgcgc cctgcggggg agacctgact tttgaccccg
721 gcccccggga cctggtggag ccctgggtgg tggttcgagg gctacgtcct gacttcacct
781 atacctttga ggtcactgca ttgaacgggg tatcctcctt agccacgggg cccgtcccat
841 ttgagcctgt caatgtcacc actgaccgag aggtacctcc tgcagtgtcc gacatccggg
901 tgacgcggtc ctcacccagc agcttgagcc tggcctgggc tgttccccgg gcacccagtg
961 gggctgtgct ggactacgag gtcaaatacc atgagaaggg cgccgagggt cccagcagcg
1021 tgcggttcct gaagacgtca gaaaaccggg cagagctgcg ggggctgaag cggggagcca
1081 gctacctggt gcaggtacgg gcgcgctctg aggccggcta cgggcccttc ggccaggaac
1141 atcacagcca gacccaactg gatgagagcg agggctggcg ggagcagctg gccctgattg
1201 cgggcacggc agtcgtgggt gtggtcctgg tcctggtggt cattgtggtc gcagttctct
1261 gcctcaggaa gcagagcaat gggagagaag cagaatattc ggacaaacac ggacagtatc
1321 tcatcgggca tggtactaag gtctacatcg accccttcac ttatgaagac cctaatgagg
1381 ctgtgaggga atttgcaaaa gagatcgatg tctcctacgt caagattgaa gaggtgattg
1441 gtgcaggtga gtttggcgag gtgtgccggg ggcggctcaa ggccccaggg aagaaggaga
1501 gctgtgtggc aatcaagacc ctgaagggtg gctacacgga gcggcagcgg cgtgagtttc
1561 tgagcgaggc ctccatcatg ggccagttcg agcaccccaa tatcatccgc ctggagggcg
1621 tggtcaccaa cagcatgccc gtcatgattc tcacagagtt catggagaac ggcgccctgg
1681 actccttcct gcggctaaac gacggacagt tcacagtcat ccagctcgtg ggcatgctgc
1741 ggggcatcgc ctcgggcatg cggtaccttg ccgagatgag ctacgtccac cgagacctgg
1801 ctgctcgcaa catcctagtc aacagcaacc tcgtctgcaa agtgtctgac tttggccttt
1861 cccgattcct ggaggagaac tcttccgatc ccacctacac gagctccctg ggaggaaaga
1921 ttcccatccg atggactgcc ccggaggcca ttgccttccg gaagttcact tccgccagtg
1981 atgcctggag ttacgggatt gtgatgtggg aggtgatgtc atttggggag aggccgtact
2041 gggacatgag caatcaggac gtgatcaatg ccattgaaca ggactaccgg ctgcccccgc
2101 ccccagactg tcccacctcc ctccaccagc tcatgctgga ctgttggcag aaagaccgga
2161 atgcccggcc ccgcttcccc caggtggtca gcgccctgga caagatgatc cggaaccccg
2221 ccagcctcaa aatcgtggcc cgggagaatg gcggggcctc acaccctctc ctggaccagc
2281 ggcagcctca ctactcagct tttggctctg tgggcgagtg gcttcgggcc atcaaaatgg
2341 gaagatacga agaaagtttc gcagccgctg gctttggctc cttcgagctg gtcagccaga
2401 tctctgctga ggacctgctc cgaatcggag tcactctggc gggacaccag aagaaaatct
2461 tggccagtgt ccagcacatg aagtcccagg ccaagccggg aaccccgggt gggacaggag
2521 gaccggcccc gcagtactga cctgcaggaa ctccccaccc cagggacacc gcctccccat
2581 tttccggggc agagtgggga ctcacagagg cccccagccc tgtgccccgc tggattgcac
2641 tttgagcccg tggggtgagg agttggcaat ttggagagac aggatttggg ggttctgcca
2701 taataggagg ggaaaatcac cccccagcca cctcggggaa ctccagacca agggtgaggg
2761 cgcctttccc tcaggactgg gtgtgaccag aggaaaagga agtgcccaac atctcccagc
2821 ctccccaggt gcccccctca ccttgatggg tgcgttcccg cagaccaaag agagtgtgac
2881 tcccttgcca gctccagagt gggggggctg tcccaggggg caagaagggg tgtcagggcc
2941 cagtgacaaa atcattgggg tttgtagtcc caacttgctg ctgtcaccac caaactcaat
3001 catttttttc ccttgtaaat gcccctcccc cagctgctgc cttcatattg aaggtttttg
3061 agttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3121 aaaaaaaaaa aaaaaaaa
//