LOCUS BC004130 2294 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calcium binding and coiled-coil domain 2, mRNA (cDNA
clone MGC:1399 IMAGE:3505988), complete cds.
ACCESSION BC004130
VERSION BC004130.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2294)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2294)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC004130.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33519473.
FEATURES Location/Qualifiers
source 1..2294
/db_xref="H-InvDB:HIT000031719"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1399 IMAGE:3505988"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2294
/gene="CALCOCO2"
/gene_synonym="MGC17318"
/gene_synonym="NDP52"
/db_xref="GeneID:10241"
/db_xref="HGNC:HGNC:29912"
/db_xref="MIM:604587"
CDS 41..1381
/gene="CALCOCO2"
/gene_synonym="MGC17318"
/gene_synonym="NDP52"
/codon_start=1
/product="calcium binding and coiled-coil domain 2"
/protein_id="AAH04130.1"
/db_xref="GeneID:10241"
/db_xref="HGNC:HGNC:29912"
/db_xref="MIM:604587"
/translation="MEETIKDPPTSAVLLDHCHFSQVIFNSVEKFYIPGGDVTCHYTF
TQHFIPRRKDWIGIFRVGWKTTREYYTFMWVTLPIDLNNKSAKQQEVQFKAYYLPKDD
EYYQFCYVDEDGVVRGASIPFQFRPENEEDILVVTTQGEVEEIEQHNKELCKENQELK
DSCISLQKQNSDMQAELQKKQEELETLQSINKKLELKVKEQKDYWETELLQLKEQNQK
MSSENEKMGIRVDQLQAQLSTQEKEMEKLVQGDQDKTEQLEQLKKENDHLFLSLAEQR
KDQKKLEQTVEQMKQNETTAMKKQQELMDENFDLSKRLSENEIICNALQRQKERLEGE
NDLLKRENSRLLSYMGLDFNSLPYQVPTSDEGGARQNPGLAYGNPYSGIQESSSPSPL
SIKKCPICKADDICDHTLEQQQMQPLCFNCPICDKIFPATEKQIFEDHVFCHSL"
BASE COUNT 728 a 475 c 504 g 587 t
ORIGIN
1 ctgtcgcgcc gctgctggtt gctgtccctg gacccctacc atggaggaga ccatcaaaga
61 tccccccaca tcagctgtct tgctggatca ctgtcatttc tctcaggtca tctttaacag
121 tgtggagaag ttctacatcc ctggagggga cgtcacatgt cattatacct tcacccagca
181 tttcatccct cgtcgaaagg attggattgg catctttaga gtggggtgga agacaacccg
241 tgagtattac accttcatgt gggttacttt gcccattgac ctaaacaaca aatcagctaa
301 acagcaggaa gtccaattca aagcttacta cctgcccaag gatgatgagt attaccagtt
361 ctgctatgtg gatgaggatg gtgtggtccg gggagcaagt attcctttcc aattccgtcc
421 agaaaatgag gaagacatcc tggttgttac cactcaggga gaggtggaag agattgagca
481 gcacaacaag gagctttgca aagaaaacca ggagctgaag gacagctgta tcagcctcca
541 gaagcagaac tcagacatgc aggctgagct ccaaaagaag caggaggagc tagaaaccct
601 acagagcatc aataagaagt tggaactgaa agtgaaagaa cagaaggact attgggagac
661 agagctgctt caactgaaag aacaaaacca gaagatgtcc tcagaaaatg agaagatggg
721 aatcagagtg gatcagcttc aggcccagct gtcaactcaa gagaaagaaa tggagaagct
781 tgttcaggga gatcaagata agacagagca gttagagcag ctgaaaaagg aaaatgacca
841 cctctttctc agtttagctg aacagaggaa ggaccagaag aagctcgagc agacagtgga
901 gcaaatgaag cagaatgaaa ctactgcaat gaagaaacaa caggaattaa tggatgaaaa
961 ctttgacctg tcaaaaagac tgagtgagaa cgaaattata tgtaatgctc tgcagagaca
1021 gaaagagaga ttggaaggag aaaatgatct tttgaagagg gagaacagca gattgctcag
1081 ttacatgggt ctggatttta attctttgcc gtatcaagta cctacttcag atgaaggagg
1141 cgcaagacaa aatccaggac ttgcctatgg aaacccatat tctggtatcc aagaaagttc
1201 ttcccccagc ccgctctcca tcaagaaatg ccctatctgc aaagcagatg atatttgtga
1261 tcacaccttg gagcaacagc agatgcagcc cctttgtttc aattgtccaa tttgtgacaa
1321 gatcttccca gctacagaga agcagatctt tgaagaccac gtgttctgcc actctctctg
1381 agtatcccaa cctcttggat gtatacagag attttataga atagaaccta tagcttctac
1441 catgagttat atgagtcaag atcctgccta acctgaaatt attagggatt tactcagccc
1501 tgctgccgct aacagtggag ttatgtcact gatctgaagg tcactgttaa gggcttctgc
1561 tgccatcctt gtgggttgct acctttaagt cgcataactc tagctgtatc atcctctcac
1621 ctgtcattct tctgagggtc tcagtacaag ggccctggga tggagccaac ctgggtattc
1681 acaacaggcc tgacttgata ctaagtgatt agttttccaa gttgtcccac tgccattcaa
1741 agtcagccct tgagtgtatt tgttctcagt cctaaccctg gggccagaga ttggtccgag
1801 gttgagaatt ccttcctcct catccttggt gttgctttct ccaaatgatt gttttagact
1861 agccaaaaat gccgtggcaa agagctcaga aatccaattt ggataccaaa ggtttctcat
1921 gttaatttct cagcccccaa agaagcatct tactcctgaa ccttagacag gaagtattgt
1981 ttcagtcaca gaaagctttt ctgggtacct ctggttagca ctttctactc tctgatattt
2041 cctatgtaca tagcttttat tgttgtaaat cctttcttaa tggttaaata ggattgttag
2101 caactatggg tttgcagttt tctgagtagg tgagttttga atatgggtaa atcagaataa
2161 tgagacaact tgttaatctc tttaatacta aaaataaatt actcttctat ttcagggact
2221 taggtaattt aaaataaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aaaa
//