LOCUS BC004116 1659 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens WD repeat domain, phosphoinositide interacting 2, mRNA
(cDNA clone MGC:11167 IMAGE:3842487), complete cds.
ACCESSION BC004116
VERSION BC004116.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1659)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1659)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC004116.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 14 Row: e Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1659
/db_xref="H-InvDB:HIT000031712"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:11167 IMAGE:3842487"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1659
/gene="WIPI2"
/gene_synonym="Atg21"
/gene_synonym="CGI-50"
/gene_synonym="DKFZP434J154"
/gene_synonym="FLJ12979"
/gene_synonym="FLJ14217"
/gene_synonym="FLJ42984"
/gene_synonym="WIPI-2"
/db_xref="GeneID:26100"
/db_xref="HGNC:HGNC:32225"
/db_xref="MIM:609225"
CDS 160..1524
/gene="WIPI2"
/gene_synonym="Atg21"
/gene_synonym="CGI-50"
/gene_synonym="DKFZP434J154"
/gene_synonym="FLJ12979"
/gene_synonym="FLJ14217"
/gene_synonym="FLJ42984"
/gene_synonym="WIPI-2"
/codon_start=1
/product="WD repeat domain, phosphoinositide interacting
2"
/protein_id="AAH04116.1"
/db_xref="GeneID:26100"
/db_xref="HGNC:HGNC:32225"
/db_xref="MIM:609225"
/translation="MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWS
LAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVC
HFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAG
LCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLA
TASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFK
LETVKEKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNIC
SLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHD
CPLVTQTYGAAAGKGTYVPSSPTRLAYTDDLGAVGGACLEDEASALRLDEDSEHPPMI
LRTD"
BASE COUNT 395 a 468 c 477 g 319 t
ORIGIN
1 aacaagagcg gggacgggat gaggcggcgg ttgatcccag ggtggcgagt ggcggcgacc
61 gaggcggcga gcggggcccg gcgccgaccc tgagtgcagc ctgacccgcc ctcgcgcgcg
121 cgccctcccc ggccgggccc actcgccgcg cgcccagcca tgaacctggc gagccagagc
181 ggggaggccg gcgccggcca gctgctcttc gccaacttca accaggacaa cacagaagtg
241 aaaggggcat caagagcagc tggtcttggc cgtcgcgctg ttgtctggtc cctagctgtt
301 ggtagtaagt ccggttataa atttttctcc ctttcttctg tggataagct ggaacagatc
361 tatgaatgca ccgatacgga agatgtgtgc attgtagaga gattgttctc cagcagccta
421 gtggccatcg tgagccttaa agcaccaagg aagctaaagg tttgccactt taagaaggga
481 actgagatct gcaactacag ctactccaac acgattctgg ctgtgaagct caacaggcag
541 aggctgatag tatgcctgga ggagtccctg tacatccaca acattcggga catgaaggtg
601 ctgcatacga tcagggagac gcctccaaac cctgcaggcc tgtgtgcgct gtcaatcaac
661 aacgacaact gctacttggc gtacccaggg agcgcgacca tcggagaggt gcaggtcttc
721 gataccatta atttgagagc tgcaaacatg attccggctc acgacagtcc tttagcggca
781 ctggcctttg acgcaagtgg aactaaactt gccacggctt cggagaaggg gaccgtgatt
841 agggtatttt ccattccaga aggacaaaaa ctctttgagt ttcggagagg agtaaagagg
901 tgcgtgagca tctgctccct ggccttcagc atggacggca tgttcctctc cgcctccagc
961 aacactgaga ccgtgcacat cttcaaactc gagactgtga aagaaaaacc cccagaggag
1021 cccaccacct ggaccgggta cttcgggaaa gtgctcatgg cctccaccag ctacctgcct
1081 tcccaagtga cagaaatgtt caaccagggc agagccttcg ccacggtccg cctgccattc
1141 tgcggccaca aaaacatctg ctcgctagcc acaattcaga agatcccgcg gttgttggtg
1201 ggtgccgccg acgggtacct gtacatgtac aacctggacc cccaggaggg cggcgagtgt
1261 gccctgatga agcagcaccg gctggacggc agtctggaaa cgaccaatga gatcttggac
1321 tctgcctctc acgactgccc cttagtcact cagacatacg gcgcagctgc aggaaaaggt
1381 acttacgtgc cttcatcccc aacgagactt gcctacacag acgacctggg tgctgtgggt
1441 ggcgcctgcc tggaggacga ggccagcgcc ctgcgcctgg atgaggacag cgagcacccg
1501 cccatgattc ttcggactga ctgaacttga cctgtgacct ctgacccggg gagcagagaa
1561 cactggcttc acagaggact ttgtgcattg ctgctatgaa ctttgacctg agtcggggga
1621 gaggatggca gagactttat taaaaaaaaa aaaaaaaaa
//