LOCUS BC003578 2549 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 3, mRNA (cDNA clone MGC:2656 IMAGE:3537259), complete
cds.
ACCESSION BC003578
VERSION BC003578.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2549)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2549)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: f Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375645.
FEATURES Location/Qualifiers
source 1..2549
/db_xref="H-InvDB:HIT000031615"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2656 IMAGE:3537259"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2549
/gene="LRFN3"
/gene_synonym="MGC2656"
/gene_synonym="SALM4"
/db_xref="GeneID:79414"
/db_xref="HGNC:HGNC:28370"
CDS 453..2339
/gene="LRFN3"
/gene_synonym="MGC2656"
/gene_synonym="SALM4"
/codon_start=1
/product="leucine rich repeat and fibronectin type III
domain containing 3"
/protein_id="AAH03578.1"
/db_xref="GeneID:79414"
/db_xref="HGNC:HGNC:28370"
/translation="MAILPLLLCLLPLAPASSPPQSATPSPCPRRCRCQTQSLPLSVL
CPGAGLLFVPPSLDRRAAELRLADNFIASVRRRDLANMTGLLHLSLSRNTIRHVAAGA
FADLRALRALHLDGNRLTSLGEGQLRGLVNLRHLILSNNQLAALAAGALDDCAETLED
LDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLDMTSNRLTT
IPPDPLFSRLPLLARPRGSPASALVLAFGGNPLHCNCELVWLRRLAREDDLEACASPP
ALGGRYFWAVGEEEFVCEPPVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQG
RLLGNSSRARAFPNGTLELLVTEPGDGGIFTCIAANAAGEATAAVELTVGPPPPPQLA
NSTSCDPPRDGDPDALTPPSAASASAKVADTGPPTDRGVQVTEHGATAALVQWPDQRP
IPGIRMYQIQYNSSADDILVYRMIPAESRSFLLTDLASGRTYDLCVLAVYEDSATGLT
ATRPVGCARFSTEPALRPCGAPHAPFLGGTMIIALGGVIVASVLVFIFVLLMRYKVHG
GQPPGKAKIPAPVSSVCSQTNGALGPTPTPAPPAPEPAALRAHTVVQLDCEPWGPGHE
PVGP"
BASE COUNT 440 a 935 c 738 g 436 t
ORIGIN
1 ccaaggggcc tgaacccgag tttgggcctg aagtccttgc tgcagacctg agtgcttaaa
61 tctggggctt gagacctccc aatcttgact cagcacccca atatctgaat gcagaacccc
121 gggatcggat ctcagactct aaaccccacc gtttggctgc ttagcatccc aagactggac
181 ctgggagacc ctgaccctga acaacccaaa ctggacccgt aaaactggac cctagaggcc
241 caatatttag gggtctggaa ccccgagtat taaggtctgg agactccgtt gccacagatt
301 tgagccgagt caggacacag tccctctaca gaagccttgg ggacaggaaa agcatgacca
361 gatgctccct ccagagccct gacctctgac tcccctggag ctaggactct gctccctggg
421 gctgcttcta gctcaggaca cccctgcccg cgatggccat cctcccgttg ctcctgtgcc
481 tgctgccgct ggcccctgcc tcatccccac cccagtcagc cacacccagc ccatgtcccc
541 gccgctgccg ctgccagaca cagtcgctgc ccctaagcgt gctgtgccca ggggcaggcc
601 tcctgttcgt gccaccctcg ctggaccgcc gggcagccga gctgcggctg gcagacaact
661 tcatcgcctc cgtgcgccgc cgcgacctgg ccaacatgac aggcctgctg catctgagcc
721 tgtcgcggaa caccatccgc cacgtggctg ccggcgcctt cgccgacctg cgggccctgc
781 gtgccctgca cctggatggc aaccggctga cctcactggg cgagggccag ctgcgcggcc
841 tggtcaactt gcgccacctc atcctcagca acaaccagct ggcagcgctg gcggccggcg
901 ccctggatga ttgtgccgag acactggagg acctcgacct ctcctacaac aacctcgagc
961 agctgccctg ggaggccctg ggccgcctgg gcaacgtcaa cacgttgggc ctcgaccaca
1021 acctgctggc ttctgtgccc gccggcgctt tttcccgcct gcacaagctg gcccggctgg
1081 acatgacctc caaccgcctg accacaatcc cacccgaccc actcttctcc cgcctgcccc
1141 tgctcgccag gccccggggc tcgcccgcct ctgccctggt gctggccttt ggcgggaacc
1201 ccctgcactg caactgcgag ctggtgtggc tgcgtcgcct ggcgcgggag gacgacctcg
1261 aggcctgcgc gtccccacct gctctgggcg gccgctactt ctgggcggtg ggcgaggagg
1321 agtttgtctg cgagccgccc gtggtgactc accgctcacc acctctggct gtgcccgcag
1381 gtcggccggc tgccctgcgc tgccgggcag tgggggaccc agagccccgt gtgcgttggg
1441 tgtcacccca gggccggctg ctaggcaact caagccgtgc ccgcgccttc cccaatggga
1501 cgctggagct gctggtcacc gagccgggtg atggtggcat cttcacctgc attgcggcca
1561 atgcagctgg cgaggccaca gctgctgtgg agctgactgt gggtccccca ccacctcctc
1621 agctagccaa cagcaccagc tgtgaccccc cgcgggacgg ggatcctgat gctctcaccc
1681 caccctccgc tgcctctgct tctgccaagg tggccgacac tgggccccct accgaccgtg
1741 gcgtccaggt gactgagcac ggggccacag ctgctcttgt ccagtggccg gatcagcggc
1801 ctatcccggg catccgcatg taccagatcc agtacaacag ctcggctgat gacatcctcg
1861 tctacaggat gatcccggcg gagagccgct cgttcctgct gacggacctg gcgtcaggcc
1921 ggacctacga tctgtgcgtg ctcgccgtgt atgaggacag cgccacgggg ctcacggcca
1981 cgcggcctgt gggctgcgcc cgcttctcca ccgaacctgc gctgcggcca tgcggggcgc
2041 cgcacgctcc cttcctgggc ggcacgatga tcatcgcgct gggcggcgtc atcgtagcct
2101 cggtactggt cttcatcttc gtgctgctaa tgcgctacaa ggtgcacggc ggccagcccc
2161 ccggcaaggc caagattccc gcgcctgtta gcagcgtttg ctcccagacc aacggcgccc
2221 tgggccccac gcccacgccc gccccgcccg ccccggagcc cgcggcgctc agggcccaca
2281 ccgtggtcca gctggactgc gagccctggg ggcccggcca cgaacctgtg ggaccctagc
2341 caggcgcccc cccctctaag ggtcctctgg ccccacggac agcaggaccc ggacaccctg
2401 tgggacctgg cctcaaactc accaaatcgc tcatggtttt taaaactctg atggggaggg
2461 tgtcggggac accggggcaa aacaagaaag tcctattttt ccaagcttgg gcgaaaaaaa
2521 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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