LOCUS BC003565 2926 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens hepatocyte growth factor-regulated tyrosine kinase
substrate, mRNA (cDNA clone MGC:2045 IMAGE:3544197), complete cds.
ACCESSION BC003565
VERSION BC003565.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2926)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2926)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24496766.
FEATURES Location/Qualifiers
source 1..2926
/db_xref="H-InvDB:HIT000031603"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2045 IMAGE:3544197"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2926
/gene="HGS"
/gene_synonym="HRS"
/gene_synonym="ZFYVE8"
/db_xref="GeneID:9146"
/db_xref="HGNC:HGNC:4897"
/db_xref="MIM:604375"
CDS 78..2411
/gene="HGS"
/gene_synonym="HRS"
/gene_synonym="ZFYVE8"
/codon_start=1
/product="hepatocyte growth factor-regulated tyrosine
kinase substrate"
/protein_id="AAH03565.1"
/db_xref="GeneID:9146"
/db_xref="HGNC:HGNC:4897"
/db_xref="MIM:604375"
/translation="MGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKY
AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEV
NVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDW
VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQ
LNRKAEGKATSTTELPPEYLTSPLSQQSQLPPKRDETALQEEEELQLALALSQSEAEE
KERLRQKSTYTSYPKAEPMPSASSAPPASSLYSSPVNSSAPLAEDIDPELARYLNRNY
WEKKQEEARKSPTPSAPVPLTEPAAQPGEGHAAPTNVVENPLPETDSQPIPPSGGPFS
EPQFHNGESEESHEQFLKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMH
PQLLELLNQLDERRLYYEGLQDKLAQIRDARGALSALREEHREKLRRAAEEAERQRQI
QLAQKLEIMRQKKQEYLEVQRQLAIQRLQEQEKERQMRLEQQKQTVQMRAQMPAFPLP
YAQLQAMPAAGGVLYQPSGPASFPSTFSPAGSVEGSPMHGVYMSQPAPAAGPYPSMPS
TAADPSMVSAYMYPAGATGAQAAPQAQAGPTASPAYSSYQPTPTAGYQNVASQAPQSL
PAISQPPQSSTMGYMGSQSVSMGYQPYNMQNLMTTLPSQDASLPPQQPYIAGQQPMYQ
QMAPSGGPPQQQPPVAQQPQAQGPPAQGSEAQLISFD"
BASE COUNT 621 a 963 c 876 g 466 t
ORIGIN
1 cggaagcgga agtcgggggg cgcgccagct cgtagcaggg gagcgcccgc ggcgtcgggt
61 ttgggctgga ggtcgccatg gggcgaggca gcggcacctt cgagcgtctc ctagacaagg
121 cgaccagcca gctcctgttg gagacagatt gggagtccat tttgcagatc tgcgacctga
181 tccgccaagg ggacacacaa gcaaaatatg ctgtgaattc catcaagaag aaagtcaacg
241 acaagaaccc acacgtcgcc ttgtatgccc tggaggtcat ggaatctgtg gtaaagaact
301 gtggccagac agttcatgat gaggtggcca acaagcagac catggaggag ctgaaggacc
361 tgctgaagag acaagtggag gtaaacgtcc gtaacaagat cctgtacctg atccaggcct
421 gggcgcatgc cttccggaac gagcccaagt acaaggtggt ccaggacacc taccagatca
481 tgaaggtgga ggggcacgtc tttccagaat tcaaagagag cgatgccatg tttgctgccg
541 agagagcccc agactgggtg gacgctgagg aatgccaccg ctgcagggtg cagttcgggg
601 tgatgacccg taagcaccac tgccgggcgt gtgggcagat attctgtgga aagtgttctt
661 ccaagtactc caccatcccc aagtttggca tcgagaagga ggtgcgcgtg tgtgagccct
721 gctacgagca gctgaacagg aaagcggagg gaaaggccac ttccaccact gagctgcccc
781 ccgagtacct gaccagcccc ctgtctcagc agtcccagct gccccccaag agggacgaga
841 cggccctgca ggaggaggag gagctgcagc tggccctggc gctgtcacag tcagaggcgg
901 aggagaagga gaggctgaga cagaagtcca cgtacacttc gtaccccaag gcggagccca
961 tgccctcggc ctcctcagcg ccccccgcca gcagcctgta ctcttcacct gtgaactcgt
1021 cggcgcctct ggctgaggac atcgaccctg agctcgcacg gtatctcaac cggaactact
1081 gggagaagaa gcaggaggag gctcgcaaga gccccacgcc atctgcgccc gtgcccctga
1141 cggagccggc tgcacagcct ggggaagggc acgcagcccc caccaacgtg gtggagaacc
1201 ccctcccgga gacagactct cagcccattc ctccctctgg tggccccttt agtgagccac
1261 agttccacaa tggcgagtct gaggagagcc acgagcagtt cctgaaggcg ctgcagaacg
1321 ccgtcaccac cttcgtgaac cgcatgaaga gtaaccacat gcggggccgc agcatcacca
1381 atgactcggc cgtgctctca ctcttccagt ccatcaacgg catgcacccg cagctgctgg
1441 agctgctcaa ccagctggac gagcgcaggc tgtactatga ggggctgcag gacaagctgg
1501 cacagatccg cgatgcccgg ggggcgctga gtgccctgcg cgaagagcac cgggagaagc
1561 ttcgccgggc agccgaggag gcagagcgcc agcgccagat ccagctggcc cagaagctgg
1621 agataatgcg gcagaagaag caggagtacc tggaggtgca gaggcagctg gccatccagc
1681 gcctgcagga gcaggagaag gagcggcaga tgcggctgga gcagcagaag cagacggtcc
1741 agatgcgcgc gcagatgccc gccttccccc tgccctacgc ccagctccag gccatgcccg
1801 cagccggagg tgtgctctac cagccctcgg gaccagccag cttccccagc accttcagcc
1861 ctgccggctc ggtggagggc tccccaatgc acggcgtgta catgagccag ccggcccctg
1921 ccgctggccc ctaccccagc atgcccagca ctgcggctga tcccagcatg gtgagtgcct
1981 acatgtaccc agcaggggcc actggggcgc aggcggcccc ccaggcccag gccggaccca
2041 ccgccagccc cgcttactca tcctaccagc ctactcccac agcgggctac cagaacgtgg
2101 cctcccaggc cccacagagc ctcccggcca tctctcagcc tccgcagtcc agcaccatgg
2161 gctacatggg gagccagtca gtctccatgg gctaccagcc ttacaacatg cagaatctca
2221 tgaccaccct cccaagccag gatgcgtctc tgccacccca gcagccctac atcgcggggc
2281 agcagcccat gtaccagcag atggcaccct ctggcggtcc cccccagcag cagccccccg
2341 tggcccagca accgcaggca caggggccgc cggcacaggg cagcgaggcc cagctcattt
2401 cattcgactg acccaggcca tgctcacgtc cggagtaaca ctacatacag ttcacctgaa
2461 acgcctcgtc tctaactgcc gtcgtcctgc ctccctgtcc tctactgccg gtagtgtccc
2521 ttctctgcga gtgagggggg gccttcaccc caagcccacc tcccttgtcc tcagcctact
2581 gcagtccctg agttagtctc tgctttcttt ccccagggct gggccatggg gagggaagga
2641 ctttctccca ggggaagccc ccagccctgt gggtcatggt ctgtgagagg tggcaggaat
2701 ggggaccctc accccccaag cagcctgtgc cctctggccg cactgtgagc tggctgtggt
2761 gtctgggtgt ggcctggggc tccctctgca ggggcctctc tcggcagcca cagccaaggg
2821 tggaggcttc aggtctccag cttctctgct tctcagctgc catctccagt gccccagaat
2881 ggtacagcga taataaaatg tatttcagaa aaaaaaaaaa aaaaaa
//