LOCUS BC003517 1991 bp mRNA linear HUM 11-SEP-2007
DEFINITION Homo sapiens ataxin 7-like 1, mRNA (cDNA clone MGC:10760
IMAGE:3542589), complete cds.
ACCESSION BC003517
VERSION BC003517.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1991)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1991)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1991
/db_xref="H-InvDB:HIT000050426"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10760 IMAGE:3542589"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1991
/gene="ATXN7L1"
/db_xref="GeneID:222255"
/db_xref="HGNC:HGNC:22210"
CDS 124..1725
/gene="ATXN7L1"
/codon_start=1
/product="ATXN7L1 protein"
/protein_id="AAH03517.2"
/db_xref="GeneID:222255"
/db_xref="HGNC:HGNC:22210"
/translation="MDGADESEKLDCQFSTHHPRPLAFCSFGSRLMGRGYYVFDRRWD
RFRFALNSMVEKHLNSQMWKHRNPSHRASGPSPLFRTCLTNLLSLSNIGAAWVSTLES
VAPRYPLNLAAQTPGPGGPEPGGMAADGGVEDIRKKRNGQDSFFFNKHLTLHQEPPTQ
YSLSARKIPPAADSPLPSPAAHITTPVPASVLQPFSNPSAVYLPSAPISSRLTSSYIM
TSAMLSNAAFVTSPDPSALMSHTTAFPHVAATLSIMDSTFKAPSAVSPIPAVIPSPSH
KPSKTKTSKSSKVKDLSTRSDESPSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPH
KKNCVLNASSALNSYQAAPPYNSLSVHNSNNGVSPLSAKLEPSGRTSLPGGPADIVRQ
VGAVGGSSDSCPLSVPSLALHAGDLSLASHNAVSSLPLSFDKSEGKKRKNSSSSSKAC
KITKMPGMNSVHKKNPPSLLAPVPDPVNSTSSRQVRDLLAPPSPALGGRGSWAAPLLS
RAAPTGNTSLIPVLVFPEGSFHPLL"
BASE COUNT 485 a 640 c 438 g 428 t
ORIGIN
1 ccatcatctg caaatagcat aagcagcagc acatcttcaa atcatagcgg ccacactcca
61 gagcccccac tcccaccggt tggaggtgac ctcgccagcc gactgtccag tgatgaaggg
121 gagatggacg gagccgacga atccgagaag ctagactgtc agttctccac gcaccacccc
181 agacctctgg cgttttgctc atttgggagt cgcctcatgg gacgagggta ctatgtgttt
241 gatagaagat gggatcgttt tcgattcgca ctaaactcca tggtagaaaa acacctgaat
301 tcacagatgt ggaagcacag aaacccgagc cacagggcat caggtccctc ccccctgttc
361 aggacttgcc taaccaatct gctgtcactg agcaacattg gggctgcctg ggtgtcaact
421 ctggagagcg tagcaccccg ctaccctctc aacctcgctg cccaaacccc aggccccggc
481 gggcccgaac ctggagggat ggcagccgat gggggcgtgg aagacattag gaagaaaagg
541 aacggccaag actctttttt ctttaacaag catttaactc tgcatcagga gccgccaaca
601 cagtattctc tttcagccag gaagatccct cctgcggcag atagccccct gccctcgcca
661 gcagcccaca tcaccacccc cgttccagca tccgttttgc agcctttcag caaccccagt
721 gctgtgtatc ttccttcagc tcccatcagc tcgaggctca cctcttctta cataatgaca
781 tcagccatgc tctcaaacgc agctttcgtg acatcgccgg acccgagcgc cctcatgtcc
841 cacaccacag ctttccctca tgtggccgca accctcagca tcatggactc aaccttcaag
901 gccccatccg ccgtgtcccc gataccagcc gtcatccctt ccccatccca caagccatcc
961 aaaaccaaaa ccagcaaatc ctcaaaagtc aaagacctgt ccacccgtag cgacgagtct
1021 ccaagtaaca aaaaaaggaa gccacagtct tcgacttcct cctcctcctc ctcctcctcc
1081 tcttccttgc agacatccct ctcgtctcca ctgtcagggc ctcacaaaaa gaactgtgtt
1141 ttgaatgcca gttctgcttt gaactcctat caggcggccc ctccctataa cagcctgtct
1201 gtgcacaact caaacaatgg ggtgagccca ctcagtgcca aactggagcc ctcaggacgg
1261 acctcgctgc ccggcggccc cgcggacata gtgagacagg tgggcgcggt gggaggcagc
1321 agtgactcct gtcccctctc tgtgccctcc cttgcgctcc acgcagggga cctctctctg
1381 gcctcacaca atgctgtgtc ttctctgccc ctctcttttg acaaatcaga aggaaaaaag
1441 cgtaagaact cgagttctag tagcaaagcc tgtaaaatca ctaaaatgcc tggtatgaat
1501 agcgttcaca aaaagaaccc gcccagcctt ctcgcaccgg tgcccgatcc cgttaacagc
1561 acctcctctc ggcaggtaag ggacctcctg gcaccgcctt caccggctct ggggggcagg
1621 gggagctggg cagcgcccct gcttagccgg gcggctccga caggtaacac aagcttgatt
1681 cctgttctcg ttttccccga aggcagtttt caccctctgc tttgagagca ctttactgaa
1741 caagtacttg ataccacgct cactatgtgc tagacactgt tctcggcact ttacggttgt
1801 tacctcactg agtcctcacg acaccccagt gcagtgagtg cagttatcac tttacagatg
1861 agtaaactga ggcacagaga gattctgagt tccccactcc acatcggtca gttttatctt
1921 ttgaggttct gagaacattg tcattaaaga gttctgttgc taaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa a
//