LOCUS BC003505 1583 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens high-mobility group 20B, mRNA (cDNA clone MGC:10419
IMAGE:3609369), complete cds.
ACCESSION BC003505
VERSION BC003505.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1583)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1583)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 13 Row: m Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5454079.
FEATURES Location/Qualifiers
source 1..1583
/db_xref="H-InvDB:HIT000031563"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10419 IMAGE:3609369"
/tissue_type="Uterus, endometrium adenocarcinoma"
/clone_lib="NIH_MGC_44"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1583
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
CDS 57..1010
/gene="HMG20B"
/gene_synonym="BRAF25"
/gene_synonym="BRAF35"
/gene_synonym="HMGX2"
/gene_synonym="PP7706"
/gene_synonym="pp8857"
/gene_synonym="SMARCE1r"
/gene_synonym="SOXL"
/codon_start=1
/product="high-mobility group 20B"
/protein_id="AAH03505.2"
/db_xref="GeneID:10362"
/db_xref="HGNC:HGNC:5002"
/db_xref="MIM:605535"
/translation="MSHGPKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKG
SHEEEPVKKRGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITK
MLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTEKIQEKKIKKEDS
SSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRKMNVAFEEQNA
VLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPVPGTGETPT
LGTLDFYMARLHGAIERDPAQHEKLIVRIKEILAQVASEHL"
BASE COUNT 354 a 492 c 508 g 229 t
ORIGIN
1 gtcgcgcagt cgggaggtcc gggaaagttt ctttggaggt ccggcccgga gcggccatgt
61 cccacggccc caagcagccc ggcgcggccg ccgcgccggc gggcggcaag gctccgggcc
121 agcatggggg cttcgtggtg actgtcaagc aagagcgcgg cgagggtcca cgcgcgggcg
181 agaaggggtc ccacgaggag gagccggtga agaaacgcgg ctggcccaag ggcaagaagc
241 ggaagaagat tctgccgaat gggcccaagg caccggtcac gggctacgtg cgcttcctga
301 acgagcggcg cgagcagatc cgcacgcgcc acccggatct gccctttccc gagatcacca
361 agatgctggg cgccgagtgg agcaagctgc agccaacgga aaagcagcgg tacctggatg
421 aggccgagag agagaagcag cagtacatga aggagctgcg ggcgtaccag cagtctgaag
481 cctataagat gtgcacggag aagatccagg agaagaagat caagaaagaa gactcgagct
541 ctgggctcat gaacactctc ctgaatggac acaagggtgg ggactgcgat ggcttctcca
601 ccttcgatgt tcccatcttc actgaagagt tcttggacca aaacaaagcg cgtgaggcgg
661 agcttcggcg cttgcggaag atgaatgtgg ccttcgagga gcagaacgcg gtactgcaga
721 ggcacacgca gagcatgagc agcgcgcgcg agcgtctgga gcaggagctg gcgctggagg
781 agcggaggac gctggcgctg cagcagcagc tccaggccgt gcgccaggcg ctcaccgcca
841 gcttcgcctc actgccggtg ccgggcacgg gcgaaacgcc cacgctgggc actctggact
901 tctacatggc ccggcttcac ggagccatcg agcgcgaccc cgcccagcac gagaagctca
961 tcgtccgcat caaggaaatc ctggcccagg tcgccagcga gcacctgtga ggagtgggcg
1021 ggcccacgat gcagaggaga agctgtgggc gcggccctgc cacaccccac cccgtggacg
1081 agaggctggg ggtccaccct ttggggcctg gtcccatcct gcaccttggg ggctccagcc
1141 cccctaaaat taaatttctg cagcatccct ttagctttca atctccccag ccccctgaac
1201 ccggaaaaag cactcgctgc gcgatacacc cagaagaacc tcacagccga gggtgcccct
1261 cctcggagga cagccacgcg ctacactggc tctccgggcc acccccagga cacagggcag
1321 acgaaaccca cccccagcac acggcaggac cccccaaatt actcactacg gggggctgtg
1381 ccataggcca cacaggaagc tgccttgtgg ggacttacct ggggtgtccc ccgcatgcct
1441 gtaccccaga tgggtggggg ccggctttgc ccatcctgct ctcctccagc cgagggaccc
1501 tggtgggggt ggctccttct cactgctgga tccggacttt ttaaataaaa acaagtaaaa
1561 tttgaaaaaa aaaaaaaaaa aaa
//