LOCUS BC003407 2754 bp mRNA linear HUM 06-JUN-2005
DEFINITION Homo sapiens leucine rich repeat containing 40, mRNA (cDNA clone
IMAGE:3450292), partial cds.
ACCESSION BC003407
VERSION BC003407.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2754)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2754)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: f Column: 14.
FEATURES Location/Qualifiers
source 1..2754
/db_xref="H-InvDB:HIT000031550"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3450292"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2754
/gene="LRRC40"
/gene_synonym="dJ677H15.1"
/gene_synonym="FLJ20331"
/db_xref="GeneID:55631"
CDS <1..1747
/gene="LRRC40"
/gene_synonym="dJ677H15.1"
/gene_synonym="FLJ20331"
/codon_start=2
/product="LRRC40 protein"
/protein_id="AAH03407.2"
/db_xref="GeneID:55631"
/translation="DCGTSVPQGLLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEE
ANQNLSFGATERWWEQTDLTKLIISNNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSA
IRELENLQKLNVSHNKLKILPEEITNLRNLKCLYLQHNELTCISEGFEQLSNLEDLDL
SNNHLTTVPASFSSLSSLVRLNLSSNELKSLPAEINRMKRLKHLDCNSNLLETIPPEL
AGMESLELLYLRRNKLRFLPEFPSCSLLKELHVGENQIEMLEAEHLKHLNSILVLDLR
DNKLKSVPDEIILLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLRTIRREIIS
KGTQEVLKYLRSKIKDDGPSQSESATETAMTLPSESRVNIHAIITLKILDYSDKQATL
IPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVELKEMVSDVDLSFNKLSFISLELCVL
QKLTFLDLRNNFLNSLPEEMESLVRLQTINLSFNRFKMLPEVLYRIFTLETILISNNQ
VGSVDPQKMKMMENLTTLDLQNNDLLQIPPELGNCVNLRTLLLDGNPFRVPRAAILMK
GTAAILEYLRDRIPT"
BASE COUNT 931 a 449 c 475 g 899 t
ORIGIN
1 agactgcggt acctcggtac cccaagggct gttgaaggca gcgaggaaga gcggccagtt
61 aaacctgtcg ggtagaaacc tcagtgaagt gccgcagtgt gtctggagaa taaatgtgga
121 tatccctgag gaagctaatc agaatctttc gtttggtgct actgaaagat ggtgggagca
181 gacagatttg accaaactaa taatatcaaa caataaactt cagtcactta cagatgacct
241 gcgactcttg cctgcactga ctgttcttga tatacatgat aatcagttga catcccttcc
301 ttctgctata agagagctag aaaatcttca gaaacttaat gtcagccata ataaactgaa
361 aatactccct gaagaaatta caaacctaag aaacctgaag tgcctgtatc tccagcataa
421 tgaattaacc tgcatatcag agggatttga acaactttcc aatttagaag atttagatct
481 ttcaaacaat catcttacaa ctgttcctgc tagtttttct tctctgtcca gtctggtgcg
541 actcaatctt tctagtaatg aactgaagag tttgccagca gaaataaata gaatgaaaag
601 gttgaagcat ttggattgta attcaaatct cttggaaact atacctcctg aattggctgg
661 catggaatca ctagaattgc tttatttgcg gaggaataaa ttacgttttc taccagaatt
721 tccttcttgt agtctattga aggaattgca cgtaggtgaa aaccagattg aaatgttaga
781 ggcagaacat cttaaacatc tgaattcaat tcttgtgcta gacctgaggg ataacaagtt
841 aaaatctgtt ccagatgaaa ttatactact acggtccttg gaaaggcttg acctaagcaa
901 caatgatatt agtagtcttc cctattcatt ggggaacctt catttgaaat ttttggcatt
961 agaaggaaat cctttgagaa caattcgaag agaaattata agtaaaggaa cacaagaagt
1021 cctaaaatat ctacgaagca agatcaaaga tgatggacct agccaaagtg agtctgctac
1081 tgagactgcc atgacactac caagtgaatc cagagtcaat atacatgcca tcattacatt
1141 aaaaatatta gactatagtg ataaacaagc aactttgatt cctgatgagg tgtttgatgc
1201 agtaaaaagc aacatcgtca cttctattaa cttcagtaag aatcaactat gtgaaattcc
1261 aaaaaggatg gtagaactga aggaaatggt ttctgatgtc gatctcagtt ttaataaact
1321 ttcctttata tccttggagt tatgtgtgct tcagaaattg acttttttag atctcaggaa
1381 caatttttta aattctttgc cagaagaaat ggaatcactg gtaagactgc aaacgatcaa
1441 tctttccttt aataggttta aaatgctacc tgaagttcta tatcgtatct tcacacttga
1501 aacaattctg attagtaata atcaggttgg atctgtggac cctcagaaaa tgaagatgat
1561 ggaaaatctg accacgttgg accttcaaaa taatgacctc ttacaaattc caccagagct
1621 cggtaattgt gtaaacttaa gaacattact actggatgga aatccattcc gagttcctcg
1681 agcagccata ttaatgaaag gaacagctgc tatacttgaa tatttgagag accgaattcc
1741 tacttaacat ggagttgctt tataaccctt gtcatgtatt attaaccctg gttaattcta
1801 aggaggatgt aacatttgtt ttagtatcat cttaaaaggt gattattgta attgatcttg
1861 tagtttccca gtatcaccta cctgttggta taattagcct gggccatatt cactgccagt
1921 aaatattttt acatttttat ttaagatttt tgtaaggtgt tgtatacatt tgtaatggtg
1981 ataaccacaa tgtgttcata catttgttct aaatgttttg cttatgattt atcctgctaa
2041 ctttcatttt cttatagcaa gcagtttttt caaaaatgaa tttttattta atgtggttca
2101 gtattataat aacaaagcat ttttgtagaa ctggtttttt ttctcattta tttttgtatt
2161 ccatacaatg tgaccaattg acttgaatat gactagccag tttctatgtt tttgttagat
2221 ataaaattaa atcgaatttt gttgaatact gttctttggc atttaaaaaa taagaccttc
2281 ttatcttggg ccacatgtca aaagaaaaag gaaacaaaaa tatattaaaa ataagacttt
2341 tcattaccca tgataggact tttgtgatat ggctaatctc agtacacatt tcaacttaaa
2401 acctttttat ttacagcacc ataattttaa aatttacttg caatcttggt aagactaaac
2461 ttgcagtgtt tttctaaaag ggaatttgat aggtaaactt gatttaataa aaattaaata
2521 tcatttttgt ttacaccaaa attatcagaa gtaggttgat tagtcattat aacacttacc
2581 atatgattct attaagaagt caattcagta gcatgtatat caatttatat agataggtag
2641 atagcttttg gatgattgag gcatgcttat attatgaaaa aaattgctaa taaagataaa
2701 tactacatgt tcagaataaa agttacattt ttcaaaaaaa aaaaaaaaaa aaaa
//