LOCUS BC003361 1991 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 9 (sodium/hydrogen exchanger),
member 3 regulator 1, mRNA (cDNA clone MGC:5270 IMAGE:2900516),
complete cds.
ACCESSION BC003361
VERSION BC003361.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1991)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1991)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: a Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4759139.
FEATURES Location/Qualifiers
source 1..1991
/db_xref="H-InvDB:HIT000031516"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5270 IMAGE:2900516"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1991
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
CDS 206..1282
/gene="SLC9A3R1"
/gene_synonym="EBP50"
/gene_synonym="NHERF"
/codon_start=1
/product="solute carrier family 9 (sodium/hydrogen
exchanger), member 3 regulator 1"
/protein_id="AAH03361.1"
/db_xref="GeneID:9368"
/db_xref="HGNC:HGNC:11075"
/db_xref="MIM:604990"
/translation="MSADAAAGAPLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP
GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQLQKL
GVQVREELLRAQEAPGQAEPPAAAEVQGAGNENEPREADKSHPEQRELRPRLCTMKKG
PSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA
IRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEA
ALESPRPALVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMAKERA
HQKRSSKRAPQMDWSKKNELFSNL"
BASE COUNT 411 a 626 c 591 g 363 t
ORIGIN
1 gcggggattg gtctgtgctc ctctctcggc tcctcgcggc tcgcggcggc cgacggttcc
61 tgggacacct gcttgcttgg cccgtccggc ggctcagggc ttctctgctg cgctcccggt
121 tcgctggacg ggaagaaggg ctgggccgtc ccgtcccgtc cccatcggaa ccccaagtcg
181 cgccgctgac ccgtcgcagg gcgagatgag cgcggacgca gcggccgggg cgcccctgcc
241 ccggctctgc tgcctggaga agggtccgaa cggctacggc ttccacctgc acggggagaa
301 gggcaagttg ggccagtaca tccggctggt ggagcccggc tcgccggccg agaaggcggg
361 gctgctggcg ggggaccggc tggtggaggt gaacggcgaa aacgtggaga aggagaccca
421 ccagcaggtg gtgagccgca tccgcgccgc actcaacgcc gtgcgcctgc tggtggtcga
481 ccccgagacg gacgagcagc tgcagaagct cggcgtccag gtccgagagg agctgctgcg
541 cgcccaggaa gcgccggggc aggccgagcc gccggccgcc gccgaggtgc agggggctgg
601 caacgaaaat gagcctcgcg aggccgacaa gagccacccg gagcagcgcg agcttcggcc
661 tcggctctgt accatgaaga agggccccag tggctatggc ttcaacctgc acagcgacaa
721 gtccaagcca ggccagttca tccggtcagt ggacccagac tccccggctg aggcttcagg
781 gctccgggcc caggatcgca ttgtggaggt gaacggggtc tgcatggagg ggaagcagca
841 tggggacgtg gtgtccgcca tcagggctgg cggggacgag accaagctgc tggtggtgga
901 cagggaaact gacgagttct tcaagaaatg cagagtgatc ccatctcagg agcacctgaa
961 tggtcccctg cctgtgccct tcaccaatgg ggagatacag aaggagaaca gtcgtgaagc
1021 cctggcagag gcagccttgg agagccccag gccagccctg gtgagatccg cctccagtga
1081 caccagcgag gagctgaatt cccaagacag ccccccaaaa caggactcca cagcgccctc
1141 gtctacctcc tcctccgacc ccatcctaga cttcaacatc tccctggcca tggccaaaga
1201 gagggcccac cagaaacgca gcagcaaacg ggccccgcag atggactgga gcaagaaaaa
1261 cgaactcttc agcaacctct gagcgccctg ctgccaccca gtgactggca gggccgagcc
1321 agcattccac cccacctttt tccttctccc caattactcc cctgaatcaa tgtacaaatc
1381 agcacccaca tcccctttct tgacaaatga tttttctaga gaactatgtt cttccctgac
1441 tttagggaag gtgaatgtgt tcccgtcctc ccgcagtcag aaaggagact ctgcctccct
1501 cctcctcact gagtgcctca tcctaccggg tgtccctttg ccaccctgcc tgggacatcg
1561 ctggaacctg caccatgcca ggatcatggg accaggcgag agggcaccct cccttcctcc
1621 cccatgtgat aaatgggtcc agggctgatc aaagaactct gactgcagaa ctgccgctct
1681 cagtggacag ggcatctgtt atcctgagac ctgtggcaga cacgtcttgt tttcatttga
1741 tttttgttaa gagtgcagta ttgcagagtc tagaggaatt tttgtttcct tgattaacat
1801 gattttcctg gttgttacat ccagggcatg gcagtggcct cagccttaaa cttttgttcc
1861 tactcccacc ctcagcgaac tgggcagcac ggggagggtt tggctacccc tgcccatccc
1921 tgagccaggt accaccattg taaggaaaca ctttcagaaa ttcagctggt tcctccaaaa
1981 aaaaaaaaaa a
//