LOCUS BC003082 2541 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens transmembrane protein 48, mRNA (cDNA clone MGC:970
IMAGE:3509727), complete cds.
ACCESSION BC003082
VERSION BC003082.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2541)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC003082.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059744.
FEATURES Location/Qualifiers
source 1..2541
/db_xref="H-InvDB:HIT000031412"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:970 IMAGE:3509727"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2541
/gene="TMEM48"
/gene_synonym="FLJ10407"
/gene_synonym="NDC1"
/gene_synonym="RP4-654H19.1"
/db_xref="GeneID:55706"
/db_xref="HGNC:HGNC:25525"
/db_xref="MIM:610115"
CDS 242..2266
/gene="TMEM48"
/gene_synonym="FLJ10407"
/gene_synonym="NDC1"
/gene_synonym="RP4-654H19.1"
/codon_start=1
/product="transmembrane protein 48"
/protein_id="AAH03082.1"
/db_xref="GeneID:55706"
/db_xref="HGNC:HGNC:25525"
/db_xref="MIM:610115"
/translation="MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFI
IFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVVPSIPCSR
LALIGKIIHPQQLMHSFIHAAMGMVMAWCAAVITQGQYSFLVVPCTGTNSFDSPAAQT
CLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCV
ESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPLDTVSGLLNLSLLYHVWLC
GVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLPKVLNSNPPPIIKYLALQD
LMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLNGMTQKLILYQEAAATNGR
VSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTSLFSSKLSTPDVVSPFGTP
FGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPSPSTSISAE
GKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPEASIQAVFSDAQMHIWALE
GLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYFKLPHASSKPPRISGSLVD
TSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQKRLQQFLEFKE"
BASE COUNT 669 a 561 c 548 g 763 t
ORIGIN
1 cagagggcgg ttcctggagt tacagccgcg tttgcgggac gtgtctgcgc ggcagtcctg
61 gcctgttgag cttgtccaga cgaagcctcg cagggatggg ttggagcctg ggccgggctt
121 cgctcaggca gcgtttgagg cagacccagc agggtcctcc tggggccttc ctgcctttga
181 actgcggtgg cgggcgggcg cacggtctcc tgtacgccct agactagggg ccgccatctc
241 catggccacg gccgtgagcc ggccctgcgc cggcaggtcg cgggacatac tgtggcgcgt
301 tttgggctgg aggatagttg caagtattgt ttggtcagtg ctatttctac ccatctgcac
361 cacagtattt ataattttca gcaggattga tttgtttcat cctatacagt ggctgtctga
421 ttctttcagt gacctgtata gttcctatgt aatcttttac ttcctgctgc tgtcagtggt
481 aataataata ataagtattt tcaatgtgga gttctatgca gttgtgcctt ctattccttg
541 ctccagacta gctctgatag ggaagatcat tcatcctcag caactcatgc actcatttat
601 tcatgctgca atgggaatgg tgatggcctg gtgtgctgca gtgataaccc agggccagta
661 cagctttctt gtggttccct gcactggtac taacagcttt gatagccctg ctgcgcaaac
721 ctgcttaaat gaatatcatc tttttttcct actgactgga gcatttatgg gctatagcta
781 tagcctcctg tattttgtta acaacatgaa ctatcttcca tttcccatca tacagcaata
841 caagttcttg cgttttagga gatctctgct cttattagtt aaacacagtt gtgtggaatc
901 actgttcctg gttagaaatt tctgcatttt atattatttt cttggctata ttcccaaagc
961 ttggattagc actgctatga accttcacat agatgagcag gttcataggc cacttgacac
1021 agtgagtggc ctcttaaatc tctcgttact ctaccatgtc tggctgtgtg gtgtctttct
1081 cctgacgact tggtatgtct catggatact cttcaaaatc tatgccacag aggctcatgt
1141 gtttcctgtt caaccaccat ttgcagaagg gtcagatgag tgccttccaa aagtgttaaa
1201 tagcaatcct ccccccatca taaagtattt agccttgcag gacctgatgt tgctttctca
1261 atattctcct tcacgaagac aagaagtttt cagcctcagc caaccaggtg gacatcccca
1321 caattggaca gccatttcaa gggagtgttt gaatctttta aatggtatga ctcagaaact
1381 gattctctat caagaagctg ctgctacgaa tgggagagtg tcttcatctt acccagtgga
1441 acctaagaaa ttaaattctc cagaagaaac tgcttttcag acaccaaaat ctagccagat
1501 gcctcggcct tcagtgccac cattagttaa aacatcactg ttttcttcaa aattatctac
1561 acctgatgtt gtgagcccat ttgggacccc atttggctct agtgtaatga atcggatggc
1621 tggaattttt gatgtaaaca cctgctatgg gtcaccgcaa agtcctcagc taataagaag
1681 ggggccaaga ttgtggacat cagcttctga tcagcaaatg actgaatttt ctaatccttc
1741 tccatctacc tctattagtg ctgagggtaa gacaatgaga caacccagtg tgatttattc
1801 atggattcag aataaacgtg aacagattaa gaatttcttg tcaaaacggg tgctgataat
1861 gtattttttc agtaagcacc cagaggcctc cattcaggct gttttttcag atgcccaaat
1921 gcatatttgg gcattagaag gtctgtcgca cttagtagca gcatcattta cagaggatag
1981 atttggagtt gtccagacga cactaccagc tatccttaat actttgttga cactgcaaga
2041 ggcagtcgac aagtacttta agcttcctca tgcttccagt aaaccacccc ggatttcagg
2101 aagccttgtg gacacttcat ataaaacatt aagatttgca ttcagagcat cactgaaaac
2161 tgccatctat cgaataacta ctacatttgg tgaacatctg aatgctgtgc aagcatctgc
2221 agaacatcag aaaagacttc aacagttctt ggagttcaaa gaatagttaa gtaatataaa
2281 ctgtgttcat tacactgctg atacaactac agatgggaca gtaaatgttc agcattcttg
2341 gatcagaaga aaacggacta attagatgct tcctttgtcg tggtggttgc tttgaaaact
2401 atactttaat gggagaaatc atggaaagaa attctcaaca gaataactga aaactgcctt
2461 ttctgtaccg attgcttttt gtgtgtgtgg tataataaaa tctttattca attttacaga
2521 aaaaaaaaaa aaaaaaaaaa a
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