LOCUS BC003045 3598 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens intraflagellar transport 122 homolog (Chlamydomonas),
mRNA (cDNA clone MGC:4379 IMAGE:2823536), complete cds.
ACCESSION BC003045
VERSION BC003045.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3598)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3598)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: c Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16554618.
FEATURES Location/Qualifiers
source 1..3598
/db_xref="H-InvDB:HIT000086207"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4379 IMAGE:2823536"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3598
/gene="IFT122"
/gene_synonym="SPG"
/gene_synonym="WDR10p"
/gene_synonym="WDR140"
/db_xref="GeneID:55764"
/db_xref="HGNC:HGNC:13556"
/db_xref="MIM:606045"
CDS 88..3483
/gene="IFT122"
/gene_synonym="SPG"
/gene_synonym="WDR10p"
/gene_synonym="WDR140"
/codon_start=1
/product="intraflagellar transport 122 homolog
(Chlamydomonas)"
/protein_id="AAH03045.2"
/db_xref="GeneID:55764"
/db_xref="HGNC:HGNC:13556"
/db_xref="MIM:606045"
/translation="MRAVLTWRDKAEHCINDIAFKPDGTQLILAAGSRLLVYDTSDGT
LLQPLKGHKDTVYCVAYAKDGLWSPEQKSVSKHKSSSKIICCSWTNDGQYLALGMFNG
IISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREERNDILAVADWGQKVSFYQLSGK
QIGKDRALNFDPCCISYFTKGEYILLGGSDKQVSLFTKDGVRLGTVGEQNSWVWTCQA
KPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKC
KELVKKIAIYRNRLAIQLPEKILIYELYSEDLSDMHYRVKEKIIKKFECNLLVVCANH
IILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVD
NLFAIVLLKQATAVRCLDMSASRKKLAVVDENDTCLVYDIDTKELLFQEPNANSVAWN
TQCEDMLCFSGGGYLNIKASTFPVHRQKLQGFVVGYNGSKIFCLHVFSISAVEVPQSA
PMYQYLDRKLFKEAYQIACLGVTDTDWRELAMEALEGLDFETAKKAFIRVQDLRYLEL
ISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALEMYTDLCMFEYA
KDFLGSGDPKETKMLITKQADWARNIKEPKAAVEMYISAGEHVKAIEICGDHGWVDML
IDIARKLDKAEREPLLLCATYLKKLDSPGYAAETYLKMGDLKSLVQLHVETQRWDEAF
ALGEKHPEFKDDIYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAES
RFNDAAYYYWMLSMQCLDIAQADPAQKDTMLGKFYHFQRLAELYHGYHAIHRHTEDPF
SVHRPETLFNISRFLLHSLPKDTPSGISKVKILFTLAKQSKALGAYRLARHAYDKLRG
LYIPARFQKSIELGTLTIRAKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFI
FSASSYDVLHLVEFYLEEGITDEEAISLIDLEVLRPKRDDRQLEIANNSSQILRLVET
KDSIGDEDPFTAKLSFEQGGSEFVPVVVSRLVLRSMSRRDVLIKRWPPPLRWQYFRSL
LPDASITMCPSCFQMFHSEDYELLVLQHGCCPYCRRCKDDPGP"
BASE COUNT 902 a 926 c 989 g 781 t
ORIGIN
1 cttgtggagt ggcgaccgtt agtgaggcgg ttgctgagac agacgctgag gcgggtagga
61 ggagcccgag ccgtaaggga agccgtgatg agggccgtgt tgacgtggag agataaagcc
121 gagcactgta taaatgacat cgcatttaag cctgatggaa ctcaactgat tttggctgcc
181 ggaagcagat tactggttta tgacacctct gatggcacct tacttcagcc cctcaaggga
241 cacaaagaca ctgtgtactg tgtggcatat gcgaaggatg ggttgtggtc tcctgaacag
301 aagtctgtct ccaaacacaa atcaagcagc aagatcatct gctgcagctg gacaaatgat
361 ggtcagtacc tggcgctggg gatgttcaat gggatcatca gcatacggaa caaaaatggc
421 gaggagaaag taaagatcga gcggccgggg ggctccctct cgccaatatg gtccatctgc
481 tggaaccctt caagagagga acgtaatgac atcctggctg tggctgactg gggacagaaa
541 gtttccttct accagctgag tggaaaacag attggaaagg atcgggcact gaactttgac
601 ccctgctgca tcagctactt tactaaaggc gagtacattt tgctgggggg ttcagacaag
661 caagtatctc ttttcaccaa ggatggagtg cggcttggga ctgttgggga gcagaactcc
721 tgggtgtgga cgtgtcaagc gaaaccggat tccaactatg tggtggtcgg ctgccaggac
781 ggcaccattt ccttctacca gcttattttc agcacagtcc atgggcttta caaggaccgc
841 tatgcctaca gggatagcat gactgacgtc attgtgcagc acctgatcac tgagcagaaa
901 gttcggatta aatgcaaaga gcttgtcaag aagattgcca tctacagaaa tcgattggct
961 atccaactgc cagagaaaat cctcatctat gagttgtatt cagaggactt atcagacatg
1021 cattaccggg taaaggagaa gattatcaag aagtttgagt gcaacctcct ggtggtgtgt
1081 gccaatcaca tcatcctgtg ccaggagaaa cggctgcagt gcctgtcctt cagcggagtg
1141 aaggagcggg agtggcagat ggagtctctc attcgttaca tcaaggtgat cggtggccct
1201 cctggaagag aaggcctctt agtggggctg aagaatggac agatcctgaa gatcttcgtg
1261 gacaatctct ttgctatcgt cctgctgaag caggccacag ctgtgcgctg cttggacatg
1321 agtgcctccc gtaagaagct ggccgtggta gatgaaaatg acacttgcct ggtgtatgac
1381 atcgacacca aggagctgct ttttcaggaa ccaaacgcca acagtgtagc ttggaacacc
1441 cagtgtgagg acatgctctg cttctcggga ggaggctacc tcaacatcaa agccagcacc
1501 ttccctgtgc accggcagaa gctgcagggc tttgtggtcg gctacaatgg ctccaagatc
1561 ttctgcctcc atgtcttctc catttctgcc gtggaggtgc cgcagtccgc tcccatgtac
1621 cagtacctgg ataggaaact gttcaaggaa gcctaccaga ttgcttgctt gggtgtcaca
1681 gacactgatt ggcgtgaact ggccatggaa gcgctagaag gtttagattt tgaaactgca
1741 aagaaggcct tcatcagagt acaagacctc cgatatttag agctcatcag cagcattgag
1801 gagaggaaga agcggggaga gaccaacaat gacctgtttc tggcagatgt gttttcctac
1861 caggggaagt tccatgaggc cgccaaactg tacaagagga gtgggcacga gaacctcgcg
1921 cttgaaatgt acaccgacct ctgcatgttt gagtatgcca aggatttcct tggatctgga
1981 gaccccaaag aaacaaagat gctaatcacc aaacaggctg actgggccag aaatatcaag
2041 gagcccaaag ccgccgtgga gatgtacatc tcagcaggag agcacgtcaa ggccatcgag
2101 atctgtggtg accatggctg ggttgacatg ttgatcgaca tcgcccgcaa actggacaag
2161 gctgagcgcg agcccctgct gctgtgcgct acctacctca agaagctgga cagccctggc
2221 tatgctgctg agacctacct gaagatgggt gacctcaagt ccctggtgca gctgcacgtg
2281 gagacccagc gctgggatga ggcctttgct ttgggtgaga agcatcctga gtttaaggat
2341 gacatctaca tgccgtatgc tcagtggcta gcagagaacg atcgctttga ggaagcccag
2401 aaagcgttcc acaaggctgg gcgacagaga gaagcggtcc aggtgctgga gcagctcaca
2461 aacaatgccg tggcggagag caggtttaat gatgctgcct attattactg gatgctgtcc
2521 atgcagtgcc tcgatatagc tcaagcagat cctgcccaga aggacacaat gcttggcaag
2581 ttctaccact tccagcgttt ggcagagctg taccatggtt accatgccat ccatcgccac
2641 acggaagatc cgttcagtgt ccatcgtcct gaaactcttt tcaacatctc caggttcctg
2701 ctgcacagcc tgcccaagga caccccctcg ggcatctcta aagtgaaaat actcttcacc
2761 ttggccaagc agagcaaggc cctcggtgcc tacaggctgg cccggcacgc ctatgacaag
2821 ctgcgtggcc tgtacatccc tgccagattc caaaagtcca ttgagctggg taccctgacc
2881 atccgcgcca agcccttcca cgacagtgag gagttggtgc ccttgtgcta ccgctgctcc
2941 accaacaacc cgctgctcaa caacctgggc aacgtctgca tcaactgccg ccagcccttc
3001 atcttctccg cctcttccta cgacgtgcta cacctggttg agttctacct ggaggaaggg
3061 atcactgatg aagaagccat ctccctcatc gacctggagg tgctgagacc caagcgggat
3121 gacagacagc tagagattgc aaacaacagc tcccagattc tgcggctagt ggagaccaag
3181 gactccatcg gagatgagga cccgttcaca gctaagctga gctttgagca aggtggctca
3241 gagttcgtgc cagtggtggt gagccggctg gtgctgcgct ccatgagccg ccgggatgtc
3301 ctcatcaagc gatggccccc acccctgagg tggcaatact tccgctcact gctgcctgac
3361 gcctccatta ccatgtgccc ctcctgcttc cagatgttcc attctgagga ctatgagttg
3421 ctggtgcttc agcatggctg ctgcccctac tgccgcaggt gcaaggatga ccctggccca
3481 tgaccagcat cctggggacg gcctgcaccc tctgcccgcc ttggggtctg ctgggctgtg
3541 aaggagaata aagagttaaa ctgtcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//