LOCUS BC002979 977 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) subunit, alpha type,
6, mRNA (cDNA clone MGC:2333 IMAGE:3542966), complete cds.
ACCESSION BC002979
VERSION BC002979.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 977)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 977)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 8 Row: a Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23110943.
FEATURES Location/Qualifiers
source 1..977
/db_xref="H-InvDB:HIT000031331"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2333 IMAGE:3542966"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..977
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
CDS 52..792
/gene="PSMA6"
/gene_synonym="IOTA"
/gene_synonym="MGC22756"
/gene_synonym="MGC2333"
/gene_synonym="MGC23846"
/gene_synonym="p27K"
/gene_synonym="PROS27"
/codon_start=1
/product="proteasome (prosome, macropain) subunit, alpha
type, 6"
/protein_id="AAH02979.1"
/db_xref="GeneID:5687"
/db_xref="HGNC:HGNC:9535"
/db_xref="MIM:602855"
/translation="MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRG
KDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK
YKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYY
CGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVG
VVTVENPKFRILTEAEIDAHLVALAERD"
BASE COUNT 310 a 190 c 224 g 253 t
ORIGIN
1 gcgggagcta cggggcccag ggattgtgtt taaagtagtg cttctaccaa catgtcccgt
61 ggttccagcg ccggttttga ccgccacatt accatttttt cacccgaggg tcggctctac
121 caagtagaat atgcttttaa ggctattaac cagggtggcc ttacatcagt agctgtcaga
181 gggaaagact gtgcagtaat tgtcacacag aagaaagtac ctgacaaatt attggattcc
241 agcacagtga ctcacttatt caagataact gaaaacattg gttgtgtgat gaccggaatg
301 acagctgaca gcagatccca ggtacagagg gcacgctatg aggcagctaa ctggaaatac
361 aagtatggct atgagattcc tgtggacatg ctgtgtaaaa gaattgccga tatttctcag
421 gtctacacac agaatgctga aatgaggcct cttggttgtt gtatgatttt aattggtata
481 gatgaagagc aaggccctca ggtatataag tgtgatcctg caggttacta ctgtgggttt
541 aaagccactg cagcgggagt taaacaaact gagtcaacca gcttccttga aaaaaaagtg
601 aagaagaaat ttgattggac atttgaacag acagtggaaa ctgcaattac atgcctgtct
661 actgttctat caattgattt caaaccttca gaaatagaag ttggagtagt gacagttgaa
721 aatcctaaat tcaggattct tacagaagca gagattgatg ctcaccttgt tgctctagca
781 gagagagact aaacattgtc gttagtttac cagatccgtg atgccactta cctgtgtgtt
841 tggtaacaac aaaccaacat catggaggtc cctggattga aaaaggagcc tctcccactc
901 ctcctaccac cgaagtggtt aggactctat ataaataaaa acaaggcttt tggaaaataa
961 aaaaaaaaaa aaaaaaa
//