LOCUS BC002918 2117 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens carbohydrate (chondroitin 4) sulfotransferase 12, mRNA
(cDNA clone MGC:10632 IMAGE:3955396), complete cds.
ACCESSION BC002918
VERSION BC002918.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2117)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2117)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: c Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070291.
FEATURES Location/Qualifiers
source 1..2117
/db_xref="H-InvDB:HIT000031288"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10632 IMAGE:3955396"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2117
/gene="CHST12"
/gene_synonym="C4S-2"
/gene_synonym="C4ST-2"
/gene_synonym="C4ST2"
/db_xref="GeneID:55501"
/db_xref="HGNC:HGNC:17423"
/db_xref="MIM:610129"
CDS 145..1389
/gene="CHST12"
/gene_synonym="C4S-2"
/gene_synonym="C4ST-2"
/gene_synonym="C4ST2"
/codon_start=1
/product="CHST12 protein"
/protein_id="AAH02918.1"
/db_xref="GeneID:55501"
/db_xref="HGNC:HGNC:17423"
/db_xref="MIM:610129"
/translation="MTKARLFRLWLVLGSVFMILLIIVYWDSAGAAHFYLHTSFSRPH
TGPPLPTPGPDRDRELTADSDVDEFLDKFLSAGVKQSDLPRKETEQPPAPGSMEESVR
GYDWSPRDARRSPDQGRQQAERRSVLRGFCANSSLAFPTKERAFDDIPNSELSHLIVD
DRHGAIYCYVPKVACTNWKRVMIVLSGSLLHRGAPYRDPLRIPREHVHNASAHLTFNK
FWRRYGKLSRHLMKVKLKKYTKFLFVRDPFVRLISAFRSKFELENEEFYRKFAVPMLR
LYANHTSLPASAREAFRAGLKVSFANFIQYLLDPHTEKLAPFNEHWRQVYRLCHPCQI
DYDFVGKLETLDEDAAQLLQLLQVDRQLRFPPSYRNRTASSWEEDWFAKIPLAWRQQL
YKLYEADFVLFGYPKPENLLRD"
BASE COUNT 417 a 659 c 635 g 406 t
ORIGIN
1 ggcaacgagg ggctgcctct ggggggtccg ctagtcgcgg ggcggcggcg gcggctgcgg
61 gcgcgaggtt cccagcagga tgccccggct ctgcaggaag ctgaagtgag aggcccggag
121 agggcccagc ccgcccgggg caggatgacc aaggcccggc tgttccggct gtggctggtg
181 ctggggtcgg tgttcatgat cctgctgatc atcgtgtact gggacagcgc aggcgccgcg
241 cacttctact tgcacacgtc cttctctagg ccgcacacgg ggccgccgct gcccacgccc
301 gggccggaca gggacaggga gctcacggcc gactccgatg tcgacgagtt tctggacaag
361 tttctcagtg ctggcgtgaa gcagagcgac cttcccagaa aggagacgga gcagccgcct
421 gcgccgggga gcatggagga gagcgtgaga ggctacgact ggtccccgcg cgacgcccgg
481 cgcagcccag accagggccg gcagcaggcg gagcggagga gcgtgctgcg gggcttctgc
541 gccaactcca gcctggcctt ccccaccaag gagcgcgcat tcgacgacat ccccaactcg
601 gagctgagcc acctgatcgt ggacgaccgg cacggggcca tctactgcta cgtgcccaag
661 gtggcctgca ccaactggaa gcgcgtgatg atcgtgctga gcggaagcct gctgcaccgc
721 ggtgcgccct accgcgaccc gctgcgcatc ccgcgcgagc acgtgcacaa cgccagcgcg
781 cacctgacct tcaacaagtt ctggcgccgc tacgggaagc tctcccgcca cctcatgaag
841 gtcaagctca agaagtacac caagttcctc ttcgtgcgcg accccttcgt gcgcctgatc
901 tccgccttcc gcagcaagtt cgagctggag aacgaggagt tctaccgcaa gttcgccgtg
961 cccatgctgc ggctgtacgc caaccacacc agcctgcccg cctcggcgcg cgaggccttc
1021 cgcgctggcc tcaaggtgtc cttcgccaac ttcatccagt acctgctgga cccgcacacg
1081 gagaagctgg cgcccttcaa cgagcactgg cggcaggtgt accgcctctg ccacccgtgc
1141 cagatcgact acgacttcgt ggggaagctg gagactctgg acgaggacgc cgcgcagctg
1201 ctgcagctac tccaggtgga ccggcagctc cgcttccccc cgagctaccg gaacaggacc
1261 gccagcagct gggaggagga ctggttcgcc aagatccccc tggcctggag gcagcagctg
1321 tataaactct acgaggccga ctttgttctc ttcggctacc ccaagcccga aaacctcctc
1381 cgagactgaa agctttcgcg ttgctttttc tcgcgtgcct ggaacctgac gcacgcgcac
1441 tccagttttt ttatgaccta cgattttgca atctgggctt cttgttcact ccactgcctc
1501 tatccattga gtactgtatc gatattgttt tttaagatta atatatttca ggtatttaat
1561 acgaaatgtg gaagggaatg ctggagtaaa atatcccctc tcccctccgc ccgcccgccc
1621 gcccgcccgc tcgcccgccc gcccgctcgc ccgctcctgt ggtttttctg agcgtgcggg
1681 ctccgggagg ggatgctgag gctgatggag ctgcctccag ggctagggcc actcaccgga
1741 ggagggcggg gcctgcactt gaagtcaggc cgcacctgtc tgtttttgga agggtagccg
1801 acaaatcctt ccagagggaa agttctttgt ttaagtgttg tacttgaaaa ggtcaatctt
1861 cagggcttcc tgtttgaagt caagtcagag gtaaaccggt cagttacaga agcaggattt
1921 ctaggatttc taactccagc tgttcccata ctgtctagtt taaattatgg ctgttaaggc
1981 cgggcgggtg actcaggcag gtaatcccag aactttggga ggcccagaca gaaggatcgc
2041 ttgaggtcag gaatttgaga cctggccaac atggtgaaac cctgtctcta ctaaaaaaaa
2101 aaaaaaaaaa aaaaaaa
//