LOCUS BC002862 1671 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens aldo-keto reductase family 1, member C-like 2, mRNA
(cDNA clone MGC:10612 IMAGE:3941289), complete cds.
ACCESSION BC002862
VERSION BC002862.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1671)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1671)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC002862.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 15 Row: a Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147396
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1671
/db_xref="H-InvDB:HIT000031247"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10612 IMAGE:3941289"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1671
/gene="AKR1CL2"
/gene_synonym="LoopADR"
/db_xref="GeneID:83592"
/db_xref="HGNC:HGNC:23437"
CDS 92..1015
/gene="AKR1CL2"
/gene_synonym="LoopADR"
/codon_start=1
/product="AKR1CL2 protein"
/protein_id="AAH02862.1"
/db_xref="GeneID:83592"
/db_xref="HGNC:HGNC:23437"
/translation="MGDIPAVGLSSWKASPGKVTEAVKEAIDAGYRHFDCAYFYHNER
EVGAGIRCKIKEGAVRREDLFIATKLWCTCHKKSLVETACRKSLKALKLNYLDLYLIH
WPMGFKPPHPEWIMSCSELSFCLSHPRVQDLPLDESNMVIPSDTDFLDTWEAMEDLVI
TGLVKNIGVSNFNHEQLERLLNKPGLRFKPLTNQIECHPYLTQKNLISFCQSRDVSVT
AYRPLGGSCEGVDLIDNPVIKRIAKEHGKSPAQILIRFQIQRNVIVIPGSITPSHIKE
NIQVFDFELTQHDMDNILSLNRNLRLAMFPM"
BASE COUNT 434 a 413 c 425 g 399 t
ORIGIN
1 acggcgggtc gccagcgcct cagtagctcg cgcggtgcct gtcggtagtc gcgtgcgggg
61 cggcggggcg gcggggcggc cggcggcggc catgggagat atcccagccg tgggcctcag
121 ctcctggaag gcttctccag ggaaagtgac cgaggcagtg aaagaggcca ttgacgcagg
181 gtaccggcac ttcgactgtg cttactttta ccacaatgag agggaggttg gagcagggat
241 ccgttgcaag atcaaggaag gcgctgtaag acgggaggat ctgttcattg ccactaagct
301 gtggtgcacc tgccataaga agtccttggt ggaaacagca tgcagaaaga gtctcaaggc
361 cttgaagctg aactatttgg acctctacct catacactgg cccatgggtt tcaagcctcc
421 tcatccagaa tggatcatga gctgcagtga actttccttc tgcctctcac atcctcgagt
481 gcaggacttg cctctggacg agagcaacat ggttattccc agtgacacgg acttcctgga
541 cacgtgggag gccatggagg acctggtgat caccgggctg gtgaagaaca tcggggtgtc
601 aaacttcaac catgaacagc ttgagaggct tttgaataag cctgggttga ggttcaagcc
661 actaaccaac cagattgagt gccacccata tcttactcag aagaatctga tcagtttttg
721 ccaatccaga gatgtgtccg tgactgctta ccgtcctctt ggtggctcgt gtgagggggt
781 tgacctgata gacaaccctg tgatcaagag gattgcaaag gagcacggca agtctcctgc
841 tcagattttg atccgatttc aaatccagag gaatgtgata gtgatccccg gatctatcac
901 cccaagtcac attaaagaga atatccaggt gtttgatttt gaattaacac agcacgatat
961 ggataacatc ctcagcctaa acaggaatct ccgactggcc atgttcccca tgtaaatatg
1021 gctccttctt tttaaaacag agggaagaat atacagattg aatgattggt gtctgaatag
1081 aactaaaaat cacaaagact atcctttcca catagaatac tgaggacgct tccccttcct
1141 tgtttctgct cagcccagat gcacagacac tattggcaat gttgaccctc ctctgtcatc
1201 acagcgccag ggcagctgtg cctgggacag gagccacaca gtcagagggg gatgtaagag
1261 ccaccttctc tgacaaatct ggagaattga gtgtgttcta agtgaaggca atggggtttc
1321 tccaagacag cctgtgtggc ctctactctg aacaaataca ctgatgagtc atcagtgaaa
1381 tttgccttca cattttaaga aaactttatc ttatggagtt atttaagcca tctacagagc
1441 tgaggaaaca gtgtaatgtg tctctgcccc attgcgcagc tccacccatt gtgccccagg
1501 ccagcccgcg tcacctacac ttccttctgt gccctgccag tgacccccag gttattctaa
1561 agcagagtcc ttcccttccc ccagtgagaa ggaaaatggg ataagtctgg gacactgttt
1621 cagttcaata aagaggcttt tttcttcctt aaaaaaaaaa aaaaaaaaaa a
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