LOCUS BC002830 3189 bp mRNA linear HUM 22-SEP-2005
DEFINITION Homo sapiens ATG3 autophagy related 3 homolog (S. cerevisiae), mRNA
(cDNA clone MGC:3478 IMAGE:3633903), complete cds.
ACCESSION BC002830
VERSION BC002830.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3189)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3189)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-FEB-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 12 Row: j Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34147490.
FEATURES Location/Qualifiers
source 1..3189
/db_xref="H-InvDB:HIT000258894"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3478 IMAGE:3633903"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3189
/gene="ATG3"
/gene_synonym="APG3"
/gene_synonym="DKFZp564M1178"
/gene_synonym="FLJ22125"
/gene_synonym="MGC15201"
/gene_synonym="PC3-96"
/db_xref="GeneID:64422"
CDS 394..1347
/gene="ATG3"
/gene_synonym="APG3"
/gene_synonym="DKFZp564M1178"
/gene_synonym="FLJ22125"
/gene_synonym="MGC15201"
/gene_synonym="PC3-96"
/codon_start=1
/product="ATG3 protein"
/protein_id="AAH02830.1"
/db_xref="GeneID:64422"
/translation="MQNVINTVKGKALEVAEYLTPVLKESKFKETGVITPEEFVAAGD
HLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRCKQMEYSDELEAIIEEDD
GDGGWVDTYHNTGITGITEAVKEITLENKDNIRLQDCSALCEEEEDEDEGEAADMEEY
EESGLLETDEATLDTRKIVEACKAKTDAGGEDAILQTRTYDLYITYDKYYQTPRLWLF
GYDEQRQPLTVEHMYEDISQDHVKKTVTIENHPHLPPPPMCSVHPCRHAEVMKKIIET
VAEGGGELGVHMYPSLYVRLVAKWLLTIFFFEKFSVTLMIQ"
BASE COUNT 1104 a 578 c 629 g 878 t
ORIGIN
1 ggcacgagga ggaagggaag ccggaagggg cgcgagtgaa gcaaagcgag gacagacagc
61 tcccagaggg cgaggggtgc gtgtgcgtcc gcttctcacc tcaggtctcc cttcggcccc
121 gctgccctcc ctcgcggctg ggtgacagct gggtccggtc cctcgcgggc tgcctggggt
181 gcgaggatcg cgcaccccgt cttcgcgcgc tgtgcctgcc gccccgcccc ctcgtcccgc
241 ccgtcccgtc gcgtcgcgtc ccgtcccctc gggtgctgcc agccgggtgc tgatgcgagt
301 cggtggcagc gaggacattt tctgactccc tggcccctga cacggctgca ctttccatcc
361 cgtcgcgggg ccggccgcta ctccggcccc aggatgcaga atgtgattaa tactgtgaag
421 ggaaaggcac tggaagtggc tgagtacctg accccggtcc tcaaggaatc aaagtttaag
481 gaaacaggtg taattacccc agaagagttt gtggcagctg gagatcacct agtccaccac
541 tgtccaacat ggcaatgggc tacaggggaa gaattgaaag tgaaggcata cctaccaaca
601 ggcaaacaat ttttggtaac caaaaatgtg ccgtgctata agcggtgcaa acagatggaa
661 tattcagatg aattggaagc tatcattgaa gaagatgatg gtgatggcgg atgggtagat
721 acatatcaca acacaggtat tacaggaata acggaagccg ttaaagagat cacactggaa
781 aataaggaca atataaggct tcaagattgc tcagcactat gtgaagagga agaagatgaa
841 gatgaaggag aagctgcaga tatggaagaa tatgaagaga gtggattgtt ggaaacagat
901 gaggctaccc tagatacaag gaaaatagta gaagcttgta aagccaaaac tgatgctggc
961 ggtgaagatg ctattttgca aaccagaact tatgaccttt acatcactta tgataaatat
1021 taccagactc cacgattatg gttgtttggc tatgatgagc aacggcagcc tttaacagtt
1081 gagcacatgt atgaagacat cagtcaggat catgtgaaga aaacagtgac cattgaaaat
1141 caccctcatc tgccaccacc tcccatgtgt tcagttcacc catgcaggca tgctgaggtg
1201 atgaagaaaa tcattgagac tgttgcagaa ggagggggag aacttggagt tcatatgtat
1261 ccttccctgt atgtaagatt agtggcaaaa tggctgttaa cgattttttt ttttgagaaa
1321 tttagtgtaa ccttaatgat acagtagcta taacttgttt taacttctca tctgaaaatc
1381 ctagtagaag tctttcattt atttagaaaa tgttatattg tgatagttat gccttgctta
1441 gttgattaga acatgtcccc atgtgtagca gtagctcacc cttgttacag aggtaactac
1501 taatttagaa taataatatg agtatctttt tcttatgtac atttccagtt taacatgtta
1561 ccaaaaatgt actttcccat caggtaaaag taaaattagg ttgtgtcaat ctgaggtgtc
1621 tctgaagcaa ataattcagc ttaaacaaat acgttaatta aaagtaatgt actacgtgaa
1681 gtgctttaga tattcttaaa atatagtacg ttcatttttc tcaagacagt agcacctttc
1741 ttgtatctta ctatagtttt cctactcagt tttcttggat tgacaaaagt aatacattca
1801 agttaatgcc caagcaaact gttggatcct aaagtacatg cactcatagc atagatttat
1861 caaaaacagt caaaatcaat gatttacatg ccagatagct tgaattagtt tgatgctagg
1921 ttaatacttg acttggtggt ggtttcggct actatgtgtt agattagatg tggagactaa
1981 gatgccacgt ctaatcagac tgtggggcat tgctaataaa gtgtgtccct aagaagaact
2041 ttgaactgat ttgatattga aacaaaccaa aaacttccag tccaaaccat atttactcct
2101 gaagtcctat tatgcctaac tggcacatct ctgctggatg ctaggtagca acttggaaga
2161 ctgtctatat ataattcata atagtaattg gtttccccca atgaaaagta agctcctaat
2221 gtttttaagt gcaatgaaca taaaaaaatt tcagaattta attaaagaca gtccagtaga
2281 gctcagtctt tggcaaatac atacactaac ctagaatcag tctactatac aggattttta
2341 tttaattttt ttctcttttg ctatagtact tcattatagt ctattctgcc tcattttctg
2401 acataactct agcaaactta aaggagtcta gtaaatgagt acattttgta ctcatttaaa
2461 catgtatagc tttgtccttt ttatgtcaaa gtaattgtgc ttatatgaac acctactcat
2521 taagaagttt caaattcaat aatcgaatga gtggtcaggt agtcttaaag agcctcatgt
2581 taaatagaca caaatttaca tagttgaatt ctttaataga cttaatttaa gattttgtgg
2641 ggtttttttg agaaattaat ggcttaataa aatggataat tacaacatgg gcttaaaaca
2701 tagaactatt tacaaatctt attttcctta gctaaaaacc tttaggtatc ttcttatttt
2761 cttgaaattt gtacaagctg tcattccaac aatagaatat gactacacaa gacacttcac
2821 aatgtaatga agagagcata aaatctatcc taattattgg ttctgatttt taaagaatta
2881 acccatagat gtgaccattg accatattca tcaatatata cagtttctct aataagggac
2941 ttatatgttt atgcattaaa taaaaatatg ttccactacc agccttactt gtttaataaa
3001 aatcagtgca aagagaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3061 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3121 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3181 aaaaaaaaa
//